Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15p20
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 182 4e-47
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.8
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 4.9
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.9
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 6.5
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 6.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 6.5
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 8.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 8.6
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 182 bits (443), Expect = 4e-47
Identities = 83/172 (48%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Frame = -1
Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
+C+SN NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDEIY +L
Sbjct: 12 ICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEA 71
Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
+D YT NGLL MLDRNRRIK P ++Q + ++++ITCEER YD + E R
Sbjct: 72 QDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDLYRRGETL 131
Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDD-LDNDIDELLHEFES 67
N+PV+++N+DI+DNHEEA++G I D+V K+ ++ D L+ ++ +F+S
Sbjct: 132 NRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQS 183
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 294 DVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGAFLI-SDMVTKMAQ 118
+V++ E R+ + + +GS YN V ++ QD H I A L+ + A
Sbjct: 993 EVLLEKEIRLLYRAMIRYGSLEHRYNDIVKYADLTTQDAHVIKKIAADLVTASRKAVSAA 1052
Query: 117 SDDLDND 97
DL ND
Sbjct: 1053 EKDLSND 1059
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -1
Query: 228 SIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESK 64
+I Q + +++IQD+ + L+ D+ + Q D+L++ I+ L + E K
Sbjct: 11 TILGQKRELEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEK 65
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 375 NGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
N L+ LD N + K PEK + R+ C VYD ++ + RS +
Sbjct: 513 NDLVRSLDENLKTKSGPEKLYLIMARY-----CLRCVYDDKMDSLWNSRSFW 559
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 468 SADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGL 367
S D+ N ++F + +DE L + N++ N L
Sbjct: 587 SNDKQNTHDFQISHDENLIQLFNDESNFFNLNDL 620
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 468 SADRPN--CYEFGVLYDEIYNDLMEKDKN 388
SA +PN C +G D+IY D+M + N
Sbjct: 316 SAKQPNDACSLYGSRIDDIYRDIMPPNNN 344
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 78 RVVIHLYHCPNHRFEPFLLPYHLLKMHQSLLLRDYP 185
++++H+ +F+P++L +H K+ Q +R P
Sbjct: 221 KLILHINGIKKDQFDPYMLLFHAFKVPQWKHIRIRP 256
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 244 PFNYLIIYSFFTSYYDIKSFITHLKFF 324
PF+YLI+Y FF ++ +T L FF
Sbjct: 344 PFSYLILYYFFLDISKLQ--MTSLTFF 368
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 126 MAQSDDLDNDIDELLHEFESKCHR 55
MAQ D + I E+ H+ ES C+R
Sbjct: 130 MAQYDQKLSTIKEMYHKLESYCNR 153
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 360 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 241
+L RN + P P+ F+VC + F +++ + Q IE F
Sbjct: 467 VLSRNA-VSPVPQVFEVCCDIFYLMVFSLRAHFKQEIEVF 505
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 324 EKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVV-NIDIQDN 178
EKF+ ++ F+ ++ RV+ VI+ F + +S + + V+ N + DN
Sbjct: 326 EKFEESSKNFEKLVIMSLRVFILVIQEFCNTKSSHPETAQVLYNSFLVDN 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,157
Number of Sequences: 5004
Number of extensions: 45578
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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