Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p20
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008070-1|AAH08070.1|  194|Homo sapiens SSU72 RNA polymerase II...   249   5e-66
AL645728-3|CAI22947.1|  194|Homo sapiens SSU72 RNA polymerase II...   249   5e-66
AK001809-1|BAA91921.1|  194|Homo sapiens protein ( Homo sapiens ...   249   5e-66
AJ276409-1|CAC81713.1|  194|Homo sapiens hypothetical protein pr...   249   5e-66
AF277178-1|AAK07538.1|  194|Homo sapiens PNAS-120 protein.            248   1e-65
AL645728-2|CAI22946.1|  162|Homo sapiens SSU72 RNA polymerase II...   175   8e-44
AL645728-4|CAI22948.1|  111|Homo sapiens SSU72 RNA polymerase II...   141   2e-33
AL645728-1|CAI22945.1|  153|Homo sapiens SSU72 RNA polymerase II...    97   3e-20
AK023110-1|BAB14410.1|  153|Homo sapiens protein ( Homo sapiens ...    97   3e-20

>BC008070-1|AAH08070.1|  194|Homo sapiens SSU72 RNA polymerase II
           CTD phosphatase homolog (S. cerevisiae) protein.
          Length = 194

 Score =  249 bits (610), Expect = 5e-66
 Identities = 111/175 (63%), Positives = 138/175 (78%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR    
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130

Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
            QPVHVVN+DIQDNHEEAT+GAFLI ++   +  ++D++N+IDELL EFE K  R
Sbjct: 131 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185


>AL645728-3|CAI22947.1|  194|Homo sapiens SSU72 RNA polymerase II
           CTD phosphatase homolog (S. cerevisiae) protein.
          Length = 194

 Score =  249 bits (610), Expect = 5e-66
 Identities = 111/175 (63%), Positives = 138/175 (78%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR    
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130

Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
            QPVHVVN+DIQDNHEEAT+GAFLI ++   +  ++D++N+IDELL EFE K  R
Sbjct: 131 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185


>AK001809-1|BAA91921.1|  194|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10947 fis, clone PLACE1000066, weakly similar to
           SSU72 PROTEIN. ).
          Length = 194

 Score =  249 bits (610), Expect = 5e-66
 Identities = 111/175 (63%), Positives = 138/175 (78%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR    
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130

Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
            QPVHVVN+DIQDNHEEAT+GAFLI ++   +  ++D++N+IDELL EFE K  R
Sbjct: 131 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185


>AJ276409-1|CAC81713.1|  194|Homo sapiens hypothetical protein
           protein.
          Length = 194

 Score =  249 bits (610), Expect = 5e-66
 Identities = 111/175 (63%), Positives = 138/175 (78%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR    
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130

Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
            QPVHVVN+DIQDNHEEAT+GAFLI ++   +  ++D++N+IDELL EFE K  R
Sbjct: 131 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185


>AF277178-1|AAK07538.1|  194|Homo sapiens PNAS-120 protein.
          Length = 194

 Score =  248 bits (607), Expect = 1e-65
 Identities = 110/175 (62%), Positives = 138/175 (78%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR    
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130

Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
            QPVHVVN+DIQDNHEEAT+GAFLI ++   +  ++D++N+IDELL EFE +  R
Sbjct: 131 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEERVGR 185


>AL645728-2|CAI22946.1|  162|Homo sapiens SSU72 RNA polymerase II
           CTD phosphatase homolog (S. cerevisiae) protein.
          Length = 162

 Score =  175 bits (427), Expect = 8e-44
 Identities = 75/111 (67%), Positives = 92/111 (82%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 247
           KDK  YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 71  KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121


>AL645728-4|CAI22948.1|  111|Homo sapiens SSU72 RNA polymerase II
           CTD phosphatase homolog (S. cerevisiae) protein.
          Length = 111

 Score =  141 bits (342), Expect = 2e-33
 Identities = 64/102 (62%), Positives = 80/102 (78%)
 Frame = -1

Query: 360 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQD 181
           MLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E   SR     QPVHVVN+DIQD
Sbjct: 1   MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQD 60

Query: 180 NHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
           NHEEAT+GAFLI ++   +  ++D++N+IDELL EFE K  R
Sbjct: 61  NHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 102


>AL645728-1|CAI22945.1|  153|Homo sapiens SSU72 RNA polymerase II
           CTD phosphatase homolog (S. cerevisiae) protein.
          Length = 153

 Score = 97.5 bits (232), Expect = 3e-20
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYY 382
           KDK  Y
Sbjct: 71  KDKELY 76


>AK023110-1|BAB14410.1|  153|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13048 fis, clone NT2RP3001399, weakly similar to
           SSU72 PROTEIN. ).
          Length = 153

 Score = 97.5 bits (232), Expect = 3e-20
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = -1

Query: 579 VCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLME 400
           VCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD++YNDL+ 
Sbjct: 11  VCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR 70

Query: 399 KDKNYY 382
           KDK  Y
Sbjct: 71  KDKELY 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,241,052
Number of Sequences: 237096
Number of extensions: 1499183
Number of successful extensions: 2217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)