Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15p20
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical pr... 216 9e-57
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical... 31 0.64
AC006708-8|AAF60429.3| 481|Caenorhabditis elegans Hypothetical ... 29 1.9
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 29 2.6
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ... 28 4.5
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 7.9
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 7.9
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 7.9
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 7.9
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 7.9
>U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical
protein T13C2.4 protein.
Length = 235
Score = 216 bits (528), Expect = 9e-57
Identities = 93/170 (54%), Positives = 127/170 (74%), Gaps = 1/170 (0%)
Frame = -1
Query: 576 CSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYDEIYNDLME 400
CSSNMNRSMEAH L K+GFN++SYG+G +VK+PG + D+PNCYEFG Y++IY DL
Sbjct: 51 CSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYEDIYADLTN 110
Query: 399 KDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWFGSRRSIY 220
KD + YTQNGLLHM+DRNRRIK P++FQ FD+++ EERV+DQV+++
Sbjct: 111 KDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDFLNRSVGKS 170
Query: 219 NQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFE 70
PVHV+NIDI+DN EEAT GAF ++D+ K+ +S+D + DID+++ + E
Sbjct: 171 GNPVHVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLE 220
>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
protein Y38F2AR.12a protein.
Length = 1187
Score = 31.1 bits (67), Expect = 0.64
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = -1
Query: 564 MNRSMEAHAFLVKKGFNVKSYGT-GEKVKLPGASADRPNCYEFGVLYDEI-YNDLMEKDK 391
M ++ +A L +KG + T G K L + RP ++F + E+ Y D++E D+
Sbjct: 76 MGTTVATNALLERKGERIGLLITKGFKDLLFIGNQARPKIFDFNIQIPEVLYEDVVEVDE 135
Query: 390 NYYTQNGLLHMLDRNRRIKPCPEKFQVCNER 298
+LD N +I+ Q+ E+
Sbjct: 136 RVLILEQTKELLDENAQIETTINGLQIVVEK 166
>AC006708-8|AAF60429.3| 481|Caenorhabditis elegans Hypothetical
protein Y110A7A.15a protein.
Length = 481
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = -1
Query: 477 PGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ 313
P + P Y GV YDEI ND + D+N N LL M I C Q
Sbjct: 162 PDLLKNEPLGYPLGVAYDEIRNDWLICDRN---MNKLLIMNVEKEEIHVCKGAIQ 213
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 222 YNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHR 55
Y+Q + V N+D N +EA I T ++S + DID+L H FE C R
Sbjct: 1140 YDQQLVVFNLD---NIQEACGQTNNIGSTETS-SKSTEQSEDIDKLDHHFEDACER 1191
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 231 RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSDDLDN-DIDELLHE 76
+SI+N + V +IQ+N +E I SDM + + +D DN D+DEL E
Sbjct: 383 QSIFNDEYYGVEENIQENEDEKPI----FSDM--EDSDYEDYDNLDVDELKRE 429
>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 7 protein.
Length = 1887
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 210 VHVVNIDIQDNHEEATIGAFLISDMVTKMAQS--DDLDNDIDELLHEFE 70
VH VN+ D + +++ AF +SD + +S D LD+DI E F+
Sbjct: 1069 VHAVNLTKFDLSDPSSLAAFALSDDDSDSDKSTQDGLDDDISEESDAFQ 1117
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 5705 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5762
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 5763 VMTPHESDKETVR 5775
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 6234 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 6291
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 6292 VMTPHESDKETVR 6304
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 5915 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5972
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 5973 VMTPHESDKETVR 5985
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 5705 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5762
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 5763 VMTPHESDKETVR 5775
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 6234 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 6291
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 6292 VMTPHESDKETVR 6304
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 5915 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5972
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 5973 VMTPHESDKETVR 5985
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 264 YDQVIEWFGSRRSIYNQPVHVVN---IDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDI 94
YD + F + Y QPV + + +D D HEE GAF + VT+ A ++
Sbjct: 5124 YDNYV--FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF 5181
Query: 93 DELLHEFESKCHR 55
HE + + R
Sbjct: 5182 VMTPHESDKETVR 5194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,643
Number of Sequences: 27780
Number of extensions: 248881
Number of successful extensions: 624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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