Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p17
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    38   5e-05
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    34   6e-04
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.37 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 37.9 bits (84), Expect = 5e-05
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = -3

Query: 438 ENVLYFEALDRVYVCDYGLCK---HENLPSVHDGTLEYFSPEKIRRHNYARSFDWYAVGV 268
           EN+L  ++   V + D+G  K   H        GT EY +PE I    +  S D++++GV
Sbjct: 495 ENLL-LDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGV 553

Query: 267 LTYKLLTG 244
           L ++LLTG
Sbjct: 554 LMFELLTG 561


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 34.3 bits (75), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 348 GTLEYFSPEKIRRHNYARSFDWYAVGVLTYKLLTG 244
           GT  Y SPE +++  Y +  D +A GV+ Y LL G
Sbjct: 74  GTPGYLSPEVLKKEPYGKPVDIWACGVILYILLVG 108


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 21/84 (25%), Positives = 33/84 (39%)
 Frame = -3

Query: 324 EKIRRHNYARSFDWYAVGVLTYKLLTGGRHPFEKSEDEMLDLNSMKRRQQYNDIGVLKHV 145
           E+  R  Y+RS +       +YK     R   E S++   D    +R ++   I  L + 
Sbjct: 265 ERTSRKRYSRSREREQK---SYKNENSYRKYRETSKERSRDRTERERSKERKIISSLSNN 321

Query: 144 RNVNARDFVYCLTRYNLDCRLTNY 73
            N N  ++ Y    YN      NY
Sbjct: 322 YNYNNNNYKYNYNNYNKKLYYKNY 345


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +2

Query: 272 PTAYQSNERA*LWRRI--FSGLKYSNVPSCTLGKFS 373
           P+ Y    R  L   +  F   KYSNVP    G F+
Sbjct: 195 PSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFN 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,183
Number of Sequences: 438
Number of extensions: 2404
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)