Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p16
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    29   0.22 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   0.90 
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.7  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   4.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   4.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   6.3  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    23   8.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   8.3  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 28.7 bits (61), Expect = 0.22
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 176 QNSRG*KTIENPQ*TN*ASNHADHFQF*KNS*IIHLKN 289
           ++S+G   IENP   N + NH+D+  F + S  +H +N
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGFIEQSETVHPEN 68


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 22.6 bits (46), Expect(2) = 0.90
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 163 LQLFSKFTGVKNY 201
           L L+SKFTG+K +
Sbjct: 824 LGLYSKFTGIKEF 836



 Score = 22.2 bits (45), Expect(2) = 0.90
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 190 VKNYRKSTINQLSFEPCRSLSILKEFIDYTLEELTD*RGP 309
           +  Y ++  N L  + CR   I   F+DY   ++ D   P
Sbjct: 873 ITTYEENLRNLLDDKKCRDELITFLFVDYADSKIQDIHRP 912


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 214 LWIFYSFLPP*ILRIAEVTLVN 149
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 166 EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 80
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 139
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 71  KTADNGEECKSFV 33
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 151 NFMDQCSS*EAEYSTNGCNRVAAC 80
           N MD C + + E +  GC+ +  C
Sbjct: 261 NLMDNCIASDTETTGLGCDNMTVC 284


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  SSLHFLHAATLLQPLVEYSASQELHW 140
           S  H LHA TL    VEY+  + L W
Sbjct: 239 SIFHVLHAFTLFDTTVEYNI-EPLLW 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,229
Number of Sequences: 5004
Number of extensions: 24320
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)