Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p16
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    29   0.70 
AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine re...    28   1.6  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    25   8.7  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    25   8.7  

>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 14  PVISIIKQKTCILLHYQQSSFF-ACSYPVTTISRIFCLSGTALVHEVYQSDFSYS 175
           P+  +I++ T  +LH+    F  +  +P  T++++  L     VH+VY+  F Y+
Sbjct: 291 PITFLIRKDT--ILHFTIIGFLVSIFFPYPTLNQVSLLLAFLPVHDVYKKHFRYT 343


>AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein185 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 17  VISIIKQKTCILLHYQQSSFFACSYPVTTISRIFCLSGTALVHEVY 154
           V+++ K+  C+   +Q + FF  S  ++TI   F +    ++ EV+
Sbjct: 168 VLAVFKRIPCLPEFFQNAPFFVLSIEISTIIIAFTVLVLVVISEVF 213


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 172 FSKFTGVKNYRKSTINQLSFEPCRSLSILK 261
           F  FTG  NY    ++ L++ P  SL++LK
Sbjct: 240 FFDFTGHSNYATLFLDVLTYFPTNSLTLLK 269


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 121 AEYSTNGCNRVAACKK*RLLIMEKNASLLFDDADD 17
           AE  TN   R A     RL  +EKN  LL+DD +D
Sbjct: 305 AEEETNPIKRAAMD---RLKEIEKNDELLYDDQED 336


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  LHYQQSSFFACSYPVTTISRIFCLS 127
           + Y ++ FFAC Y ++ +SR   L+
Sbjct: 282 MKYLKNRFFACDYSISALSRAIQLA 306


>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 257 KIESDRHGSKLNWFIVDF 204
           ++ SD H S +NW ++ F
Sbjct: 262 RMSSDEHDSSMNWILIGF 279


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 265 ILLKLKVIGMVRSSIGLLWIFYSFLPP*ILRIAEVTLVNFMDQCSS 128
           IL++  VI +  + + +LW  YS++ P    +   T +NFM  C+S
Sbjct: 226 ILIQATVITVYCTVLNVLWHNYSWMLP--QHLWSYTALNFMWICNS 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,711
Number of Sequences: 27780
Number of extensions: 135743
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)