Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15p08
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 94 1e-20
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 31 0.13
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 0.93
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 5.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 5.0
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 8.7
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 8.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.7
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 94.3 bits (224), Expect = 1e-20
Identities = 73/201 (36%), Positives = 102/201 (50%), Gaps = 6/201 (2%)
Frame = -1
Query: 589 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 425
++ G KNGG R V P + +YP +E + +A RP ++R +L GTVCI
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59
Query: 424 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPK 248
LLAGR GKRVV++ L L+VTGP+ N P+RR+ RYVI TS +I + + K
Sbjct: 60 LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK 118
Query: 247 HFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPD 68
F YF K+ + FA K +R DQK VD ++ AI A P+
Sbjct: 119 -FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 173
Query: 67 KKMLRGYLKAAFGLRSSQYPH 5
++ YL A+F L + PH
Sbjct: 174 ---MKEYLAASFALSNGDRPH 191
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 381 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 515
P S+ + P LP+RR +T I L ++ CLL P +R FS
Sbjct: 21 PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2
Query: 252 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 115
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -2
Query: 552 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 466
Y SNV SPS P R ++ L+ VHS MY
Sbjct: 96 YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -2
Query: 282 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 103
P F +TSN +TS I S R+ ++ +TS K T +S+A S
Sbjct: 888 PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947
Query: 102 RL*SKPSEP 76
+ +EP
Sbjct: 948 SSNTLSTEP 956
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 8.7
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = -2
Query: 354 LLDLLLSIRARYAAFLSAM*SAPPPEFHSATSNCQNTSMMITSRRI----RSASNVQSNA 187
L+DL + F S+ S P E A + + +TS+ + +A V+S
Sbjct: 493 LVDLFYKLLHSSKNF-SSFSSKIPDERLGALNYLLEVTEYLTSKTVDLPRSTADEVESVI 551
Query: 186 KRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRPSDSA 22
K + S+P K+N F P + RL K + R AD RR S++A
Sbjct: 552 KLELESIPVAKQNAF--GGVPPFKESQYRLFHKRAS-----RGMADLLRRKSEAA 599
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 171 SLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRPSDSAR 19
SL +++ N F ++ + I R +R +K P P S++ P +++
Sbjct: 57 SLARRRSNVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTNSQ 107
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 279 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 154
+ HS+ S+ +NT+ +++S +S+ +V+ V T K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,838
Number of Sequences: 5004
Number of extensions: 58539
Number of successful extensions: 233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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