Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p08
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.34 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -2

Query: 306 SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 127
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P    N  ++S  
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP----NMSNMSGM 429

Query: 126 KPIRRQSTRL*SKPSEPD---PTRRCSADTS 43
            P+      + + P+ P    P RR  +D S
Sbjct: 430 PPLPNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 89  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 190
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 89  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 190
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 527 LPHSGENPCLIWWPSIQQACTQDPTQ 450
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 42  LRYPRSIF 65
           LRYPRSIF
Sbjct: 386 LRYPRSIF 393


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 614 QEADCCCKADWR*EEWG--NQNST 549
           Q+AD CC   W  +  G  N++ST
Sbjct: 83  QDADFCCGMRWPGDATGLSNRSST 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 92   QSHRSPTRQEDAPRIPQGGLRTPLEPIS 9
            + + +P+RQ  +     GGL TP + ++
Sbjct: 1918 ERNEAPSRQTGSGHGGHGGLLTPYDTVA 1945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,338
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)