Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15p02
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121 29 2.4
05_04_0399 - 20955319-20955838,20955939-20956201 29 3.2
03_02_0661 + 10247128-10247895 29 4.2
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 28 5.6
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 28 5.6
09_02_0283 + 6819086-6820270 28 7.4
03_01_0457 - 3506709-3506717,3507386-3507484,3507701-3508034,350... 28 7.4
01_01_0779 - 6030245-6031780 28 7.4
11_01_0281 + 2086674-2087652,2089200-2089483 27 9.8
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 27 9.8
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 27 9.8
>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
Length = 220
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -1
Query: 593 RLEGNFWVPPIEDQLKLGPSHVLDYLRSETYKVLYSRHMSAKPPPPPQTVDK 438
R+E +W + ++ P H Y+ T +V + PPPPP ++
Sbjct: 20 RVERLYWATTAAEVMRANPGH---YVALVTLRVAEEKRPPPPPPPPPARAER 68
>05_04_0399 - 20955319-20955838,20955939-20956201
Length = 260
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 473 AKPPPPPQTVDKSKKASRAA 414
AKPPPPP+ VD S R++
Sbjct: 165 AKPPPPPRPVDSSDDGCRSS 184
>03_02_0661 + 10247128-10247895
Length = 255
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 527 LDYLRSETYKVLYSRHMSAK-PPPPPQTVDKSKKASRAA 414
LDYL+ K SR A PPPPP +VD+ + R A
Sbjct: 78 LDYLKKRL-KAERSRSKGAPAPPPPPPSVDRLRALLRLA 115
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 573 GSAHRRPAQAGAVPRAGLS-ALRDLQSPVQPP 481
GSA RPA+AG PR LS A P QPP
Sbjct: 63 GSALPRPARAGFPPRCPLSHASTAAPFPTQPP 94
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 587 EGNFWVPPIEDQLKLGPSHVLDYLRSETYKVLYSRHMSAKPPPPPQTV 444
E F ++ L++ D+ R K+L+ R S +PPPPP ++
Sbjct: 13 EREFIERALQSDLRVDGRRPFDFRR---LKILFGRSPSLRPPPPPPSM 57
>09_02_0283 + 6819086-6820270
Length = 394
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 622 WTSPATSQC*GWKVTSGFRPSKTSSSWG 539
W PA Q W TS RP T S+WG
Sbjct: 222 WFDPAKQQ---WGPTSRLRPDATVSTWG 246
>03_01_0457 -
3506709-3506717,3507386-3507484,3507701-3508034,
3508241-3508443,3508519-3508632,3508707-3508817,
3508907-3509016,3509132-3509241,3509450-3509628,
3509746-3509907,3509996-3510114,3510336-3510423,
3510520-3510625,3510769-3510857,3511211-3511354,
3511459-3511518,3511534-3511656,3511745-3511811,
3511941-3512053,3512140-3512235,3512651-3512818
Length = 867
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 625 HWTSPATSQC*GWKVTSGFRPSKTSSSWGRPT 530
+WT+ A C G T +R K + G+PT
Sbjct: 687 YWTAYAEGDCKGCHYTGSYRAPKCQAGCGQPT 718
>01_01_0779 - 6030245-6031780
Length = 511
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 539 PSHVLDYLRSETYKVLYSRHMSAKPPPPPQTVD 441
P +LDYL ET + + +A PPPP T D
Sbjct: 274 PECLLDYLMQETVREI-DEATAAGLPPPPHTSD 305
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 485 RHMSAKPPPPPQTVDKSKKAS 423
+HM+ PPPPP K K ++
Sbjct: 92 KHMALAPPPPPNKKSKKKNSN 112
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 485 RHMSAKPPPPPQTVDKSKKAS 423
+HM+ PPPPP K K ++
Sbjct: 90 KHMALAPPPPPSKKSKKKNSN 110
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 579 LLGSAHRRPAQAGAVPRAGLSALRDLQSP 493
LL +AH R A A VPR +ALR ++ P
Sbjct: 74 LLAAAHPRDAVAPLVPRLVAAALRRVRDP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,471
Number of Sequences: 37544
Number of extensions: 327809
Number of successful extensions: 1908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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