Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p02
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical pr...    62   4e-10
AL132904-5|CAC35837.2|  406|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...    27   8.7  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical...    27   8.7  
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    27   8.7  
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical
           protein C34C12.5 protein.
          Length = 268

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = -1

Query: 647 VLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLKL-GPSHVLDYLRSETYKVLYSRHMSA 471
           ++PPE+G L+L  +K VLRLE N ++P IE+Q +  G + V  ++R++ Y+  + R   +
Sbjct: 187 MIPPELGNLELVGSKQVLRLEHNPFIPRIEEQFEANGAAGVWAHIRTDDYRYFFGRQEPS 246

Query: 470 KPPPPPQTVDKSKKASR 420
             P PP+  +K KK SR
Sbjct: 247 STPVPPKR-NKEKKVSR 262


>AL132904-5|CAC35837.2|  406|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -3

Query: 570 SAHRRPAQAGAVPRAGLSA---LRDLQSPVQPPHVGQXXXXXADRRQEQ 433
           S H+RP   GA PR  L A   LR L SP Q    G        RR  Q
Sbjct: 39  SGHKRPYTPGASPREILCAQQSLRQLPSPSQTSPHGSRFMDGYRRRMRQ 87


>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 214 DTPVMCNANLLTNQNKIRLFYLYTMN 137
           DTPV C+ N+L   + + L +LY ++
Sbjct: 217 DTPVQCDPNVLPEPDHVMLNHLYALS 242


>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 551 LKLGPSHVLDYLRSETYKVLYSRHMSAKPPP 459
           LK+ P H L+ + S+ + + YSR ++A P P
Sbjct: 382 LKMAP-HTLEKVTSDNWNMPYSRELAAFPKP 411


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
            protein R12C12.1a protein.
          Length = 979

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 551  LKLGPSHVLDYLRSETYKVLYSRHMSAKPPP 459
            LK+ P H L+ + S+ + + YSR ++A P P
Sbjct: 917  LKMAP-HTLEKVTSDNWNMPYSRELAAFPKP 946


>AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5c protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 515 RSE-TYKVLYSRHMSAKPPPPPQTVDKSKKASRAA 414
           RSE T   + S   +A PPPPP +   SK++  AA
Sbjct: 265 RSEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAA 299


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 515 RSE-TYKVLYSRHMSAKPPPPPQTVDKSKKASRAA 414
           RSE T   + S   +A PPPPP +   SK++  AA
Sbjct: 400 RSEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAA 434


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 515 RSE-TYKVLYSRHMSAKPPPPPQTVDKSKKASRAA 414
           RSE T   + S   +A PPPPP +   SK++  AA
Sbjct: 445 RSEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAA 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,931
Number of Sequences: 27780
Number of extensions: 255534
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)