Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p01
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   2.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.8  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    25   6.3  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   8.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.3  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 72  YCNINQFSKRLDMSTIQSIFNM*YDIFLLFTKQIQSIM*VILFQMCRYVKIILYLNFFLS 251
           Y  + +  KR +   IQ + +M YD  L  T Q      +++ Q CR +    ++ F L 
Sbjct: 273 YVELYKAKKRRE--AIQGVLDMIYDALLSVTVQAPDYETLMVIQACRRLYKPAHIQFALP 330

Query: 252 KM 257
           K+
Sbjct: 331 KV 332


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 351  D*RAMSKRTKFLFGIGGIQLFCHLTR-VKFISASLTKKSLNTK*FSHIYTFEI 196
            D R + KRTK   G G   +FC   + V++I   L +  L       IYT ++
Sbjct: 1401 DLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDV 1453


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 351  D*RAMSKRTKFLFGIGGIQLFCHLTR-VKFISASLTKKSLNTK*FSHIYTFEI 196
            D R + KRTK   G G   +FC   + V++I   L +  L       IYT ++
Sbjct: 1401 DLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDV 1453


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 527 ELDGYALYGKPENLSLSRLK 468
           +L GY LYGKP  +  S+ K
Sbjct: 87  DLQGYPLYGKPMMIQYSKSK 106


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 233 IQNNFHISTHLK*NNSHYTLN 171
           ++NN  ISTH + N+SH   N
Sbjct: 73  LENNIPISTHNEQNDSHVNAN 93


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 400  CEIGKYVEDLLLRTAIRLTSHEQKNQIFIWN 308
            C +G+Y+ED  L T +       K    +W+
Sbjct: 955  CTLGQYIEDSCLNTNVSCGGEYCKTNDMLWH 985


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,011
Number of Sequences: 5004
Number of extensions: 44635
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)