Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p01
         (595 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   5.6  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.4  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   9.8  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 334  QKNQIFIWNRWNSIILS 284
            QK+   IWNRW+   LS
Sbjct: 1634 QKHMQHIWNRWHREYLS 1650


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 9   YLYYY*NELRRQYTVTARTF-LYCNINQFSKRLDMSTIQ 122
           Y +Y     +R  ++   T  LYC+ N+F  R  +S IQ
Sbjct: 422 YRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQ 460


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   QHYLYYY*NELRRQYTVTARTFLYCNINQFSKR 101
           Q  + YY ++ R + T+  RTF+Y      SKR
Sbjct: 516 QATIKYYPSKERWEMTMEDRTFVYGAWENLSKR 548


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,061
Number of Sequences: 2352
Number of extensions: 10771
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)