Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15o24
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 161 4e-41
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 30 0.20
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.79
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 5.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 5.6
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.3
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 161 bits (392), Expect = 4e-41
Identities = 75/98 (76%), Positives = 89/98 (90%)
Frame = -3
Query: 325 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 146
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 145 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 32
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIH 105
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 66 PLKL*NRSPQLTIEPGVEVEVT 1
P ++ + + IEPGVEVEVT
Sbjct: 94 PSEIVKQITSIHIEPGVEVEVT 115
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 0.20
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = -3
Query: 208 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINH 29
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + + + T ++
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPVTLE-TFFSY 149
Query: 28 RARC 17
+C
Sbjct: 150 LRKC 153
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 0.79
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 343 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 194
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 352 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 254
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 332 RHRETPGRGLPYSP 291
R ETPGR LP+SP
Sbjct: 163 RANETPGRNLPFSP 176
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 371 IPAEINNFSIKNCSALNRRNL 433
+ +E+N+ IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 24 ARWLIEVICFTISEGECRSITLLWI 98
++W EV FT S GECRS ++
Sbjct: 622 SQWKDEVWSFTRSIGECRSFATSFV 646
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 197 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 81
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 95 PQESDRPTLSL*NCETDHLN*PSS 24
PQ++++P L L ETD+++ PS+
Sbjct: 207 PQKNNKPPLWLYEVETDNISVPST 230
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 151 RKTPCGEGSKTWDRFQM 101
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,727
Number of Sequences: 5004
Number of extensions: 38672
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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