Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o22
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   182   6e-47
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   144   8e-36
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   138   5e-34
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...   124   2e-29
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...   105   6e-24
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    93   3e-20
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    82   6e-17
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    53   3e-08
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   2.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   3.4  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    27   3.4  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   3.4  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   5.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   5.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   7.8  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  182 bits (442), Expect = 6e-47
 Identities = 88/128 (68%), Positives = 96/128 (75%)
 Frame = -1

Query: 686 ALCTGEKGLRLQGLHFSIVSSPIXMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPG 507
           ALCTGEKG    G  F  V  P  MLQGGDFT  NGTGGKSIYG KF DENF LKH  PG
Sbjct: 36  ALCTGEKGYGYAGSTFHRVI-PQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPG 94

Query: 506 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRI 327
           +LSMANAG +TNGSQFFITTV T WLDG+HVVFG V EGM+VVK++E+ GS SG T  RI
Sbjct: 95  LLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARI 154

Query: 326 VIKDCGQI 303
           VI  CG +
Sbjct: 155 VIDKCGTV 162


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  144 bits (350), Expect = 8e-36
 Identities = 69/106 (65%), Positives = 80/106 (75%)
 Frame = -1

Query: 686 ALCTGEKGLRLQGLHFSIVSSPIXMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPG 507
           AL TGEKG   +G  F  V  P  M+QGGD T  +GTGGKSIYG++F DENF L H  PG
Sbjct: 61  ALATGEKGFGYEGSIFHRVI-PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPG 119

Query: 506 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 369
           +LSMANAG D+NGSQFFITTVKT WLDG HVVFG V+ G ++VK+I
Sbjct: 120 LLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKI 165


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  138 bits (335), Expect = 5e-34
 Identities = 73/130 (56%), Positives = 88/130 (67%), Gaps = 4/130 (3%)
 Frame = -1

Query: 686 ALCTG-EKG---LRLQGLHFSIVSSPIXMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKH 519
           +LC G EK    L  +G  F  V     MLQGGDFT  NGTGG+SIYG KFEDENF LKH
Sbjct: 37  SLCNGFEKDGRCLTYKGSRFHRVIKNF-MLQGGDFTRGNGTGGESIYGEKFEDENFELKH 95

Query: 518 TGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKT 339
             P +LSMANAG +TNGSQFFITTV T  LDG+HVVFG V++G   V+ IE   +++   
Sbjct: 96  DKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDP 155

Query: 338 SKRIVIKDCG 309
              +VI++CG
Sbjct: 156 VVPVVIEECG 165


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  124 bits (298), Expect = 2e-29
 Identities = 57/106 (53%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
 Frame = -1

Query: 614 MLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 438
           M+QGGDF + +GTG  +I+ ++ F DENFTLKH  PG+LSMANAG D+NG QFFITTV  
Sbjct: 68  MIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPC 127

Query: 437 SWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 303
            +LDG+HVVFG V+EG ++VK+IE T    + +    + I +CG++
Sbjct: 128 DFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score =  105 bits (252), Expect = 6e-24
 Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = -1

Query: 623 PIXMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITT 447
           P  ++QGGD T   G GG SIYG+KF+DE +  L HTG G+LSMANAG +TN SQFFIT 
Sbjct: 48  PDFVIQGGDPTG-TGRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITL 106

Query: 446 VKTSWLDGRHVVFGNVVEGMEVVKQI 369
             T WLDG+H +FG VV G+ V K++
Sbjct: 107 APTPWLDGKHTIFGRVVSGLSVCKRM 132


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = -1

Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKT 438
           M+QGGD    +GTGG+SI+   FEDE +  LKH  P  +SMAN+G +TNGSQFFITT  T
Sbjct: 504 MIQGGDPLG-DGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLT 562

Query: 437 SWLDGRHVVFGNVVEGMEVVKQIE 366
            WLDG+H +F     G++VV +IE
Sbjct: 563 PWLDGKHTIFARAYAGLDVVHRIE 586


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = -1

Query: 614 MLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKT 438
           M+QGGD  +  G GG+SI+G  F+DE    LKH   G++SMAN G +TNGSQFFI     
Sbjct: 325 MIQGGD-PSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPA 383

Query: 437 SWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSK 333
             LD +H +FG VV G+ V+  +E   + S    K
Sbjct: 384 KHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPK 418


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -1

Query: 623 PIXMLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITT 447
           P  ++QGGD T   G GG+SIYG  F  E    L+    G++ MA    + N SQFFIT 
Sbjct: 59  PEFLIQGGDPTG-TGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITL 117

Query: 446 VKTSWLDGRHVVFGNVV 396
             T   +G+  +FG VV
Sbjct: 118 GPTPEWNGKQTLFGRVV 134


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 343 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 429
           FP WL K S CL   +P T+ P T  + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 607 KEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 500
           KE  +P+ITA   SP +A S  + ISP +   + +S
Sbjct: 334 KEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 471 WFPVLHHHC 445
           WFP +HHHC
Sbjct: 97  WFPEVHHHC 105


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 309 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 467
           T VFD      + +L+   ++++DN     +IPK+   A       S +  +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 376 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 525
           LT  +P TTF  T  +P + +V    ++++ PL+        + P PV L
Sbjct: 37  LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 599 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 453
           D   +  T  KS+YG   +D+N F +  T   V+      ADT   Q F+
Sbjct: 11  DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 358 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 537
           P  S  + +S  +++   T+  P+S EV T       P+ S+ A + E + G     V  
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221

Query: 538 SSSNL 552
           SSS++
Sbjct: 222 SSSSI 226


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +3

Query: 387 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 548
           H  N  P    +   P   +S   EL      + IS+G+DA S VLK       E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286

Query: 549 LIAVDGLSPS 578
                 LSPS
Sbjct: 287 KFLHHSLSPS 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,148
Number of Sequences: 5004
Number of extensions: 60838
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)