Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o18
         (715 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   326   2e-89
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   326   2e-89
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   310   1e-84
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   271   5e-73
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   250   1e-66
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   198   8e-51
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    29   6.3  
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P...    29   6.3  
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    29   8.3  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  326 bits (801), Expect = 2e-89
 Identities = 155/208 (74%), Positives = 177/208 (85%)
 Frame = -3

Query: 683 KIWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 504
           K WYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKF
Sbjct: 28  KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKF 87

Query: 503 RLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTN 324
           RLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT 
Sbjct: 88  RLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTA 147

Query: 323 KDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 144
           KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  I
Sbjct: 148 KDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRI 207

Query: 143 YPLRDVCIRKVKVLKRPRFEISKLMELH 60
           YPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 208 YPLHDVYIRKVKVLKKPRFDVSKLLELH 235


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  326 bits (801), Expect = 2e-89
 Identities = 155/208 (74%), Positives = 177/208 (85%)
 Frame = -3

Query: 683 KIWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 504
           K WYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKF
Sbjct: 28  KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKF 87

Query: 503 RLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTN 324
           RLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT 
Sbjct: 88  RLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTA 147

Query: 323 KDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 144
           KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  I
Sbjct: 148 KDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRI 207

Query: 143 YPLRDVCIRKVKVLKRPRFEISKLMELH 60
           YPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 208 YPLHDVYIRKVKVLKKPRFDVSKLLELH 235


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  310 bits (762), Expect = 1e-84
 Identities = 151/210 (71%), Positives = 173/210 (82%), Gaps = 2/210 (0%)
 Frame = -3

Query: 683 KIWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTDAERSFRK 507
           K WYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D E SFRK
Sbjct: 28  KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEHSFRK 87

Query: 506 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 327
           FRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT
Sbjct: 88  FRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 147

Query: 326 NKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 150
            KD  SQRKTCYA  +QVR IR  +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C 
Sbjct: 148 AKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQ 207

Query: 149 GIYPLRDVCIRKVKVLKRPRFEISKLMELH 60
            IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 208 RIYPLHDVYIRKVKVLKKPRFDVSKLLELH 237


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  271 bits (665), Expect = 5e-73
 Identities = 129/172 (75%), Positives = 147/172 (85%)
 Frame = -3

Query: 575 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 396
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 395 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 216
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 215 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 60
           L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 185


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  250 bits (613), Expect = 1e-66
 Identities = 118/161 (73%), Positives = 136/161 (84%)
 Frame = -3

Query: 683 KIWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 504
           K WYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKF
Sbjct: 28  KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKF 87

Query: 503 RLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTN 324
           RLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT 
Sbjct: 88  RLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTA 147

Query: 323 KDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 201
           KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 148 KDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  198 bits (482), Expect = 8e-51
 Identities = 92/130 (70%), Positives = 110/130 (84%)
 Frame = -3

Query: 449 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 270
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 269 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 90
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PR
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120

Query: 89  FEISKLMELH 60
           F++SKL+ELH
Sbjct: 121 FDVSKLLELH 130


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
            transmembrane protein protein.
          Length = 3004

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 574  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTSYQI 681
            PF P +  +FVPW R+  + P  + L+ D   TS  I
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTSRNI 999


>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
            protein.
          Length = 3004

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 574  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTSYQI 681
            PF P +  +FVPW R+  + P  + L+ D   TS  I
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTSRNI 999


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 117 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 269
           + AN+      M  LLD++  GV   L+H   E     V    +   ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,145,625
Number of Sequences: 53049
Number of extensions: 727480
Number of successful extensions: 2198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)