Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o17
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0150 - 2244757-2245303,2252925-2253277                           29   3.4  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    29   4.5  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    28   6.0  
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    28   7.9  

>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 652 VLSNKPPMYSFLKEWFLLP 596
           V  + PP Y+FLKE FLLP
Sbjct: 4   VQRSTPPFYNFLKEGFLLP 22


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 472 VYDSLQELHEMGCV---LVL-WSYGSRDHVAHSMRDADLEGYFDII 347
           VYDSL+++  +  V   L L +SY S  HVAH     DL  Y D+I
Sbjct: 76  VYDSLKQICNIDVVPYSLTLGYSYWSAGHVAHLNIPDDLLPYKDVI 121


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 527 FGQHSHNRRGANSNSRFVCV*QLAGIARNGLRFSLVVVWQ 408
           F  + HNRR    NS+ V +  L+ +    + F + ++W+
Sbjct: 204 FSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWK 243


>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 469 YDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSH 290
           Y  L  L   G  ++LW   +     HS      E YF ++I  G  V + + ++++ +H
Sbjct: 146 YLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQ-EIIERAH 204

Query: 289 NAIVDY 272
           +  +DY
Sbjct: 205 HGDMDY 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,913
Number of Sequences: 37544
Number of extensions: 384302
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)