Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o15
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.60 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -2

Query: 442 FAVENSNCERYQCADKRRLSFKMHSCNHNYSGQEIDAM-VDRGIYLDY--GHLKCAYCND 272
           F V+    + ++C +K + +  +         + +D + + R   +D    +LKC  C+ 
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCST 155

Query: 271 FSSNSREAC 245
           + SN  E C
Sbjct: 156 YQSNGEEVC 164


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 509 FCAARRNVLQQR 474
           FCAARR VL++R
Sbjct: 226 FCAARRIVLEER 237


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 16  VWWATSFELRSKRFSGFLYELNSNQN 93
           V++   FE  S   S  LYEL  NQ+
Sbjct: 300 VFFLAGFETSSTTMSNALYELALNQD 325


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 555 LWAFTWSNSNKIWWRFLCRATKRSATKNCLRKTTRTWRLP--WKTQT 421
           ++AF  ++    +WR  CR   +S T   L  + R    P  WK  T
Sbjct: 358 IYAFYSADFRLAFWRLTCRKCFKSRTN--LDPSNRKLPAPANWKKDT 402


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 443 VCRGKLKL 420
           VCRGKLKL
Sbjct: 647 VCRGKLKL 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,602
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)