Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o14
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    62   4e-10
04_01_0042 + 473912-474058,474208-474349,474442-476264                 62   5e-10
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821     60   1e-09
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744...    60   1e-09
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540     60   1e-09
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201     60   2e-09
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969...    58   5e-09
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184...    55   5e-08
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    54   1e-07
06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842...    29   3.4  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    28   7.8  

>06_03_1404 - 29928792-29929040,29929147-29929551,29930130-29930280,
            29930363-29930501,29930578-29930743,29930826-29931041,
            29931142-29931323,29931412-29931538,29931974-29932112,
            29932227-29932353,29932501-29932612,29932704-29932784,
            29933330-29933483,29933569-29933689,29934003-29934045,
            29934356-29934460
          Length = 838

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
 Frame = -3

Query: 652  KLEAYKKQYEPLTRWLGDKLGXW-ITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNA 476
            KL+  K+ ++ LT W    L    +    +               +GW+ NME++  S  
Sbjct: 660  KLKDLKESFKELTDWWKKALDTESVDSVKISNRLSDTPCVVVTSKYGWSANMEKIMQS-- 717

Query: 475  HQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSG 296
             Q   D  ++ ++  K++LEINPRHPI+ EL  +V            A  +Y+TA + SG
Sbjct: 718  -QTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSESESLKQTAKLVYQTALMESG 776

Query: 295  YVLQEGQAVLFADSVETMLQRTLGL 221
            + L + +   FA S+   +Q++L L
Sbjct: 777  FNLPDPKD--FASSIYRSVQKSLDL 799


>04_01_0042 + 473912-474058,474208-474349,474442-476264
          Length = 703

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 43/151 (28%), Positives = 68/151 (45%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           + D AKE+    K+ +EPL + + D LG  + +  V               +GWT NMER
Sbjct: 531 DDDDAKER----KRSFEPLCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMER 586

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     +++ KK +EINP + I+ EL +R                L+ T
Sbjct: 587 IMKAQALR---DSSMGAYMSSKKTMEINPENGIMEELRKRADADANDKSVRDLVLLLFET 643

Query: 313 AALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
           A L SG+ L +     FA  +  ML+  L +
Sbjct: 644 ALLTSGFSLDDPNT--FAARIHRMLKLGLNI 672


>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
          Length = 576

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 39/151 (25%), Positives = 68/151 (45%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           E +  K++ E  K+++E L + + + LG  + +  V               +GWT NMER
Sbjct: 272 ESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMER 331

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     +++ KK +EINP + I+ EL +R                L+ T
Sbjct: 332 IMKAQALR---DSSMAGYMSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFET 388

Query: 313 AALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
           A L SG+ L++     F   +  ML+  L +
Sbjct: 389 ALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 417


>09_04_0548 -
           18469636-18470037,18471164-18472705,18474052-18474474,
           18474874-18474999
          Length = 830

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 39/151 (25%), Positives = 68/151 (45%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           E +  K++ E  K+++E L + + + LG  + +  V               +GWT NMER
Sbjct: 526 ESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMER 585

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     +++ KK +EINP + I+ EL +R                L+ T
Sbjct: 586 IMKAQALR---DSSMAGYMSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFET 642

Query: 313 AALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
           A L SG+ L++     F   +  ML+  L +
Sbjct: 643 ALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 671


>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
          Length = 699

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 39/151 (25%), Positives = 68/151 (45%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           E +  K++ E  K+++E L + + + LG  + +  V               +GWT NMER
Sbjct: 526 ESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMER 585

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     +++ KK +EINP + I+ EL +R                L+ T
Sbjct: 586 IMKAQALR---DSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVMLLFET 642

Query: 313 AALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
           A L SG+ L++     F   +  ML+  L +
Sbjct: 643 ALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 671


>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
          Length = 699

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 39/151 (25%), Positives = 67/151 (44%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           E +  K++ E  K+++E L + + + LG  + +  V               +GWT NMER
Sbjct: 526 ESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMER 585

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     +++ KK +EINP + I+ EL +R                L+ T
Sbjct: 586 IMKAQALR---DSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFET 642

Query: 313 AALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
           A L SG+ L +     F   +  ML+  L +
Sbjct: 643 ALLTSGFSLDDPNT--FGSRIHRMLKLGLSI 671


>09_04_0497 -
           18096299-18096496,18096586-18096675,18096809-18096914,
           18097005-18097179,18097263-18097365,18097458-18097712,
           18097791-18097868,18097986-18098078,18098179-18098319,
           18098406-18098510,18098658-18098738,18098825-18098866,
           18098966-18099082,18099208-18099351,18099485-18099568,
           18099683-18099803,18099863-18099988,18100106-18100179,
           18100388-18100657
          Length = 800

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 34/125 (27%), Positives = 52/125 (41%)
 Frame = -3

Query: 667 DRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMERLA 488
           D  ++K    K++Y  L  W+  +LG  + +  +               FGW+ NMERL 
Sbjct: 613 DEDEDKENESKQEYTLLCDWIKQQLGDKVAKVQISNRLSSSPCVLVSGKFGWSANMERLM 672

Query: 487 LSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAA 308
            +   Q   D      +  +++ EINP HPIV +L    +              LY TA 
Sbjct: 673 KA---QTLGDTSSLEFMRGRRIFEINPDHPIVKDLSAACKNEPESTEAKRAVELLYETAL 729

Query: 307 LRSGY 293
           + SGY
Sbjct: 730 ISSGY 734


>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
            24118477-24118648,24118737-24118839,24118927-24119181,
            24119259-24119336,24119449-24119541,24119660-24119800,
            24119882-24119986,24120135-24120212,24120297-24120341,
            24120463-24120579,24120685-24120828,24120934-24121017,
            24121139-24121232,24121322-24121447,24121585-24121658,
            24121870-24122098,24123124-24123611,24123702-24123749,
            24123841-24124077,24124368-24124404,24125011-24125018
          Length = 1051

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 32/115 (27%), Positives = 48/115 (41%)
 Frame = -3

Query: 637  KKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADD 458
            K++Y  L  W+  +LG  + +  +               FGW+ NMERL  +   Q   D
Sbjct: 872  KQEYTLLCDWVKQQLGDKVAKVQISKRLSLSPCVLVSGKFGWSANMERLMKA---QTLGD 928

Query: 457  PQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAALRSGY 293
                  +  +++ EINP HPIV +L    +              LY TA + SGY
Sbjct: 929  TSSLEFMRGRRIFEINPDHPIVKDLNAACKNEPESTEAKRAVELLYETALISSGY 983


>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
            19963215-19963320,19963400-19963574,19963849-19963951,
            19964382-19964636,19964726-19964803,19964908-19965000,
            19965091-19965222,19965898-19966002,19966127-19966201,
            19966284-19966340,19966419-19966532,19966613-19966756,
            19966886-19966969,19967071-19967164,19967244-19967369,
            19967507-19967580,19967672-19967875,19968234-19968388,
            19968860-19968947,19969505-19969730,19970235-19970286,
            19970766-19970958,19973221-19973314,19973744-19973788,
            19974874-19974896
          Length = 1210

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 31/125 (24%), Positives = 51/125 (40%)
 Frame = -3

Query: 667  DRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMERLA 488
            D+ +EK +  K++Y     W+  +LG  + R  +               FGW+ NMERL 
Sbjct: 873  DKNEEKEKEIKQEYSQTCDWIKKRLGEKVARVDISNRLSSSPCVLVAAKFGWSANMERLM 932

Query: 487  LSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRTAA 308
             +   Q   D      +  +K+ EINP H I+  L    +              L+ T+ 
Sbjct: 933  RA---QSMGDMSSLDFMRSRKVFEINPEHEIIKGLNAACRANPDDPEALKAVDILFETSM 989

Query: 307  LRSGY 293
            + SG+
Sbjct: 990  ISSGF 994


>06_03_0528 +
           21782567-21782651,21783355-21783563,21784095-21784232,
           21784520-21784734,21784813-21784967,21785010-21785071,
           21785832-21785834
          Length = 288

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 658 KEKLEAYKKQYEPLTRWLGDKLG-XWITRATVXXXXXXXXXXXXXXAFGWT 509
           KE LEAY  +Y   +R LGD+L   W+ ++ +               + WT
Sbjct: 222 KEVLEAYYLKYMEASRMLGDQLALAWVVKSYLPSAFSKFSKHEAFTVYNWT 272


>07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-518900,
            519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 517  GWTGNMERLALSNAHQKADDPQRRH 443
            GWT   E +  S +  K DDP+R H
Sbjct: 938  GWTSKPEGIHQSRSTTKPDDPKRAH 962


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,645,368
Number of Sequences: 37544
Number of extensions: 70172
Number of successful extensions: 350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)