Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o14
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...   106   1e-23
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    59   2e-09

>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical protein
            T05E11.3 protein.
          Length = 760

 Score =  106 bits (255), Expect = 1e-23
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
 Frame = -3

Query: 673  EXDRAKEKLEAYKKQYEPLTRWLGDK-LGXWITRATVXXXXXXXXXXXXXXAFGWTGNME 497
            + ++AKE  +  +++++PLT WL +  L   I +A V              ++GW+GNME
Sbjct: 577  DGEKAKEAHKGLEEEFKPLTDWLKETALKDLIEKAVVSQRLVKSPSALVASSYGWSGNME 636

Query: 496  RLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYR 317
            R+  S A+ KA DP +  + TQKK  EINPRHP++ ELL+RV            A  L+ 
Sbjct: 637  RIMKSQAYAKAKDPTQDFYATQKKTFEINPRHPVIKELLKRVTASEEDTTAASTAKLLFE 696

Query: 316  TAALRSGYVLQEGQAVLFADSVETMLQRTL 227
            TA LRSG+ LQ+   V FAD +E +L+++L
Sbjct: 697  TATLRSGFSLQD--QVGFADRIEAVLRQSL 724


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 40/134 (29%), Positives = 59/134 (44%)
 Frame = -3

Query: 673 EXDRAKEKLEAYKKQYEPLTRWLGDKLGXWITRATVXXXXXXXXXXXXXXAFGWTGNMER 494
           E +  K+K E  K  YE L + + D L   + +  V               +GW+ NMER
Sbjct: 523 ETEEEKKKFEEDKVAYENLCKVIKDILEKKVEKVGVSNRLVSSPCCIVTSEYGWSANMER 582

Query: 493 LALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQXXXXXXXXXXXAHTLYRT 314
           +  + A +   D     ++  KK LEINP H I+  L  RV+              L+ T
Sbjct: 583 IMKAQALR---DSSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKNDKTVKDLVVLLFET 639

Query: 313 AALRSGYVLQEGQA 272
           A L SG+ L+E Q+
Sbjct: 640 ALLASGFSLEEPQS 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,303,218
Number of Sequences: 27780
Number of extensions: 53355
Number of successful extensions: 213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)