Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o13
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   232   3e-62
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   2e-08
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   9.7  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  232 bits (568), Expect = 3e-62
 Identities = 111/218 (50%), Positives = 145/218 (66%), Gaps = 1/218 (0%)
 Frame = -1

Query: 659 GQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 480
           GQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L K
Sbjct: 37  GQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNK 96

Query: 479 YRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEKKKAQLVVIAHD 303
           YRPET                         + P  ++ G N V  L+E KKA+LV+IA D
Sbjct: 97  YRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASD 156

Query: 302 VDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVE 123
           VDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   + +V 
Sbjct: 157 VDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVS 216

Query: 122 AIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 9
           A+  NF+ +Y+E R+ WGGG++G K+ A +AK  KA A
Sbjct: 217 AVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAA 254


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -1

Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = -1

Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 78
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 627 QICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 508
           Q+   A  YP+ +S    SAS  S+P+     P T +  S
Sbjct: 308 QLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 584 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 483
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 356  LCLCRIGWC 382
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 402 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 572
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 252
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 137 SKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAK 12
           +K+ EA K  FNE  E+L    GGG L  K+    A+L+  +
Sbjct: 23  AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIR 63


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = -1

Query: 512 TAKGLFKILEKYR 474
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,717
Number of Sequences: 5004
Number of extensions: 40553
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)