Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15o08
(610 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 311 8e-84
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 293 2e-78
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 270 2e-71
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 229 5e-59
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 183 3e-45
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 180 2e-44
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 171 8e-42
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 123 4e-27
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 2e-24
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 95 1e-18
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 87 4e-16
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 86 5e-16
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 84 3e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 84 3e-15
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 81 2e-14
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 80 5e-14
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 79 6e-14
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 77 2e-13
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 77 3e-13
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 72 9e-12
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 70 5e-11
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 67 3e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 64 2e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 63 4e-09
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 53 6e-06
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 41 0.026
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 0.99
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D... 33 4.0
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 4.0
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 5.3
UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG... 33 7.0
UniRef50_Q581V5 Cluster: Putative uncharacterized protein; n=3; ... 33 7.0
UniRef50_A0C8G5 Cluster: Chromosome undetermined scaffold_158, w... 33 7.0
UniRef50_A0Q0X4 Cluster: DNA recombinase, putative; n=1; Clostri... 32 9.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 311 bits (764), Expect = 8e-84
Identities = 145/194 (74%), Positives = 163/194 (84%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
VF QDEMID I TSRWHTKKLPRKTH+GLRKVACIGAWHP+RV+F+VARA
Sbjct: 210 VFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARA 269
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQKGYHHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV ND
Sbjct: 270 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 329
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
FVM+KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFM
Sbjct: 330 FVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFM 389
Query: 69 GTLKKDRIREEAAA 28
G LKKDRI +E A
Sbjct: 390 GPLKKDRIAKEEGA 403
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 293 bits (719), Expect = 2e-78
Identities = 134/190 (70%), Positives = 154/190 (81%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
VF+Q E+ID I TSRWHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARA
Sbjct: 210 VFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARA 269
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQKGYHHRTE+NKKI+RIG+G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNND
Sbjct: 270 GQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNND 329
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
FVM+KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFM
Sbjct: 330 FVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFM 389
Query: 69 GTLKKDRIRE 40
G KK +E
Sbjct: 390 GPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 270 bits (661), Expect = 2e-71
Identities = 129/193 (66%), Positives = 150/193 (77%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQKG+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQD 278
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFM
Sbjct: 279 YIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFM 338
Query: 69 GTLKKDRIREEAA 31
G LK+D + E A
Sbjct: 339 GKLKRDFLAEAEA 351
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 229 bits (559), Expect = 5e-59
Identities = 109/191 (57%), Positives = 130/191 (68%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
VF Q E D RW LPRKTH+GLRKVACIGAWHPSRV +TVARA
Sbjct: 264 VFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARA 323
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQ GYHHRT +NKKIY++G+ + + N A+T YDL+ K+ITPMGGF YG V ND
Sbjct: 324 GQHGYHHRTHLNKKIYQLGRAVSMEP-----NQATTAYDLTAKTITPMGGFVGYGTVRND 378
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
+VM+KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ +
Sbjct: 379 YVMLKGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWY 438
Query: 69 GTLKKDRIREE 37
G LKKDRIR E
Sbjct: 439 GPLKKDRIRRE 449
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 183 bits (445), Expect = 3e-45
Identities = 98/191 (51%), Positives = 124/191 (64%)
Frame = -2
Query: 600 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 421
QDE+ID I T + P + +G K+ C+GAWHP+RV+F+VA+ GQK
Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251
Query: 420 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 241
GYHH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+
Sbjct: 252 GYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIR 310
Query: 240 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 61
+KGC + KK +T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G L
Sbjct: 311 LKGCAVRTKKH-LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPL 369
Query: 60 KKDRIREEAAA 28
KK+ EE A
Sbjct: 370 KKECTAEEEGA 380
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 180 bits (439), Expect = 2e-44
Identities = 92/163 (56%), Positives = 116/163 (71%)
Frame = -2
Query: 540 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIH 361
S W+TKK+P KTH+ + ACI W +VA A QKG HH T +NKKIY+IGQG
Sbjct: 188 SHWYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYL 240
Query: 360 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 181
K+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM+K C +G KKR+++L KSL
Sbjct: 241 IKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLL 297
Query: 180 VHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 52
+ TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 298 MRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 171 bits (417), Expect = 8e-42
Identities = 86/180 (47%), Positives = 117/180 (65%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
+F ++++ID I SRW +LPRKTH+GLRKVACIG W PSRV++T++RA
Sbjct: 192 IFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRA 251
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQKGYH RT NKKIY+IG +++ N+ S D KS+ MGGF +G +NND
Sbjct: 252 GQKGYHKRTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFINND 305
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
+++IKG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 306 YLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 123 bits (296), Expect = 4e-27
Identities = 66/164 (40%), Positives = 93/164 (56%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
V + E++D I RW K K KG RKV IG WHP+RV +TV A
Sbjct: 212 VLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMA 271
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQ G+HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFPHYG V +D
Sbjct: 272 GQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFPHYGIVRSD 320
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 118
F+MI G G KRII +R ++R K+ +++ + ++ SK
Sbjct: 321 FMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 2e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 351 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 172
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 171 KRAALEK 151
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 95.1 bits (226), Expect = 1e-18
Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 2/168 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTVA 436
VF + E++D I RW K + + KG+ R V IG W P V ++V
Sbjct: 189 VFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVP 248
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
GQ GYH RTE NK+I +IG NN ITP GGF HYG +
Sbjct: 249 MPGQMGYHQRTEYNKRILKIG------------NNGD--------EITPKGGFLHYGVIR 288
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 112
N++V++KG GP KR+I LR+++R + ++ + +I T+SK G
Sbjct: 289 NNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSKQG 334
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 86.6 bits (205), Expect = 4e-16
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVSFTVA 436
VFA E++D RW RK + +K V +G W+P R+ + V
Sbjct: 192 VFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVP 251
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
+ GQ GYH RTE NK+I ++G D +E+ ITP GGF HYG +
Sbjct: 252 QLGQTGYHQRTEYNKRILKMG-------------------DKAEE-ITPAGGFLHYGLIR 291
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 112
ND++M+KG GP KR++ +R ++R K + + ++ T SK G
Sbjct: 292 NDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQSKMG 337
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 86.2 bits (204), Expect = 5e-16
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = -2
Query: 225 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 46
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 45 REEAAA 28
+E A
Sbjct: 148 AKEEGA 153
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 83.8 bits (198), Expect = 3e-15
Identities = 52/166 (31%), Positives = 79/166 (47%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
V+ + +D + R+ K L K K R++ +G + V T+ +A
Sbjct: 214 VYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQA 273
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQ GYH RTE+NK+I RI E +TP GGF HYGEV N
Sbjct: 274 GQMGYHKRTELNKRILRISNP-------------------GESDVTPAGGFLHYGEVTNP 314
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 112
+++++G GP KR++ R +R HT + ++L ++ TSSK G
Sbjct: 315 YMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVSTSSKQG 357
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 83.8 bits (198), Expect = 3e-15
Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVSFTVA 436
VF + E++D RW RKT + R + IG PSRV +TV
Sbjct: 195 VFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVP 254
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
AGQ GYH RTE NK+I +IG+ DG + +TP GGF +YG V
Sbjct: 255 MAGQVGYHQRTEHNKRILKIGE-----DG---------------EEVTPRGGFVNYGVVR 294
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLR 181
D++MI G GPKKR+I +R ++R
Sbjct: 295 GDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 81.0 bits (191), Expect = 2e-14
Identities = 57/166 (34%), Positives = 77/166 (46%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
VF ID I R+ K L K K R++ +G + V T+ +A
Sbjct: 194 VFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQA 253
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQ GYH RTE NK+I RI A E E ITP GGF HYGEV N
Sbjct: 254 GQTGYHQRTEYNKRILRI---------------AGEE----ESQITPAGGFLHYGEVKNH 294
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 112
+++I+G GP KR+I R + R R +++ ++ T+SK G
Sbjct: 295 YMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVSTASKQG 337
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 79.8 bits (188), Expect = 5e-14
Identities = 51/142 (35%), Positives = 69/142 (48%)
Frame = -2
Query: 537 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 358
R+ K LPRK K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG--- 265
Query: 357 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 178
+A T I GGF HYG V ND+V++ G GP KR+I +R R
Sbjct: 266 -------EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR- 309
Query: 177 HTKRAALEKINLKFIDTSSKFG 112
K ++ + L +I SK G
Sbjct: 310 -QKVPDIDNVKLDYISLESKQG 330
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 79.4 bits (187), Expect = 6e-14
Identities = 51/164 (31%), Positives = 80/164 (48%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
VF + + +D I R+H + K+ KG+RKV IG+ P R+ TV
Sbjct: 182 VFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMP 241
Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
GQ GYH RTE NK I +IG+ ++ + GG+ YG+V
Sbjct: 242 GQMGYHRRTEYNKLIIKIGEPLNVE-----------------------GGWVRYGQVIGP 278
Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 118
+++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 279 TILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 77.4 bits (182), Expect = 2e-13
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTVA 436
VF E D RW +K K +G R+ + +G W+PSRV TV
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
+ GQ GYH RTE+NK++ I G TP GGFP+YGEV+
Sbjct: 251 QQGQTGYHQRTELNKRLIDINDG---------------------DEPTPDGGFPNYGEVD 289
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFG 112
+ ++KG GP++R++ R ++R + + L+ ++++ T+S G
Sbjct: 290 GPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQG 335
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 77.0 bits (181), Expect = 3e-13
Identities = 44/119 (36%), Positives = 64/119 (53%)
Frame = -2
Query: 537 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 358
RW+ KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+I +G
Sbjct: 214 RWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG----- 268
Query: 357 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 181
+T+ D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 269 ----------NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 72.1 bits (169), Expect = 9e-12
Identities = 41/130 (31%), Positives = 65/130 (50%)
Frame = -2
Query: 537 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 358
R K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 212 RMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA--- 268
Query: 357 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 178
G+ + +I P GG+ H+G V D++++KG G +R++ LR +R
Sbjct: 269 --GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRN 313
Query: 177 HTKRAALEKI 148
KR + I
Sbjct: 314 APKRTSKPNI 323
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 69.7 bits (163), Expect = 5e-11
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVA 436
VF + + ID I R+ +++PR K KG ++ +G P+ + F
Sbjct: 187 VFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKPA-IMFYTP 245
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
GQ G+H RTE NK+I ++G D + S K I P GG+PHYG V
Sbjct: 246 FPGQLGFHQRTEYNKRILKVG------DAE------------SLKEINPPGGWPHYGLVR 287
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLR 181
+ F++++G G KR++ LR ++R
Sbjct: 288 SQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 67.3 bits (157), Expect = 3e-10
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSF-TV 439
VF + +++D I RW K+LPR K KG R+ IGA R +F
Sbjct: 196 VFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWET 252
Query: 438 ARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEV 259
+AGQ G+H RTE NK+I I +K +TP GGF YG V
Sbjct: 253 PQAGQTGFHRRTEYNKRILMIDDDGYK--------------------VTPAGGFLRYGVV 292
Query: 258 NNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTSSKFG 112
+ FVM+ G G KR I +R ++R + + K + +I +SK G
Sbjct: 293 RSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 64.5 bits (150), Expect = 2e-09
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVA 436
VF + ++ID + R+ +LPR K KG RK+ G S+T
Sbjct: 208 VFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-P 265
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
+ GQ G+H RTE NK+I +IG K I P GGF YG V
Sbjct: 266 QPGQLGFHRRTEYNKRIIKIGD--------------------EPKEINPAGGFVRYGIVR 305
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLR 181
N +V+++G +G KKR I LR+ +R
Sbjct: 306 NTYVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.3 bits (147), Expect = 4e-09
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFT-V 439
VF + + ID I R+ K+LPR K KG RK IG+ P + +
Sbjct: 250 VFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSET 306
Query: 438 ARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEV 259
+ GQ G+H RTE NK+I +IG ++ +TP GGF YG V
Sbjct: 307 PQPGQMGFHRRTEYNKRIIKIG--------------------INGWEVTPKGGFLGYGIV 346
Query: 258 NNDFVMIKGCCMGPKKRIITLRKSLR 181
++M+ G +GP+KR++ LR +R
Sbjct: 347 YGPYIMLHGSIIGPRKRLLVLRHPIR 372
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 52.8 bits (121), Expect = 6e-06
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = -2
Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVA 436
V + +D I R+ K+LP+ K KG R+V +W S+ V
Sbjct: 213 VIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VP 270
Query: 435 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 256
+ GQ GYH RT+ NK++ I K I GG+ HYG V
Sbjct: 271 QPGQMGYHRRTDYNKRVLMISDDPSK--------------------INVEGGWLHYGLVK 310
Query: 255 NDFVMIKGCCMGPKKRIITLRKSLR 181
+ +V++KG GP KR I +R +R
Sbjct: 311 SKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 40.7 bits (91), Expect = 0.026
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 409 VMITFLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVN 588
+++T LTS+ + MPS+N N + P+ DT + GD+N +N
Sbjct: 1 MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60
Query: 589 HFIL 600
HFIL
Sbjct: 61 HFIL 64
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 0.99
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 185 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 63
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 35.1 bits (77), Expect = 1.3
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 196 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLS 375
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 376 NTIDFLVHFSTVMITFLTST 435
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 1.7
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 384 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 205
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 204 ITLRKSLR 181
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D
homolog 1 (Drosophila); n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Bicaudal D homolog
1 (Drosophila) - Strongylocentrotus purpuratus
Length = 762
Score = 33.5 bits (73), Expect = 4.0
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Frame = -2
Query: 348 KVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 169
K +K + ++S + T G + ++ ++ V +KG M +++++TLR L+ +
Sbjct: 585 KYLKRSVEQSVEMSRQHGTEGSGAENE-DLRDEVVQLKGLLMTKREQVVTLRTVLKANKT 643
Query: 168 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDR-----IREEAAA 28
A + NLK SK+ H +KA T+KK R ++EEAA+
Sbjct: 644 TAEVALANLK-----SKYEH-------EKAIIAETMKKLRNELKALKEEAAS 683
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 4.0
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -2
Query: 426 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 247
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 246 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 157
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 5.3
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 264 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 139
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
>UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG31;
n=2; Pseudomonadaceae|Rep: Putative uncharacterized
protein ORF SG31 - Pseudomonas aeruginosa
Length = 161
Score = 32.7 bits (71), Expect = 7.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 207 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAA 76
I R + + KR+AL+K+ K I+ + GHGR P+D+AA
Sbjct: 52 IAARRSTYKQLNKRSALDKVKRK-IEKAKGTGHGRTAVPSDQAA 94
>UniRef50_Q581V5 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 334
Score = 32.7 bits (71), Expect = 7.0
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 173 QRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL-PQPQRGCC 3
QR + RST + PR +S+ V + LTR WV + F LRL P RGCC
Sbjct: 11 QRYICANRSTYRDIWPRLASMRVPAAYSLTR---WVARKGGAFHCALRLHPHRNRGCC 65
>UniRef50_A0C8G5 Cluster: Chromosome undetermined scaffold_158, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_158, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 2502
Score = 32.7 bits (71), Expect = 7.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -3
Query: 464 ILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLKTMHLLSMIC 309
++LG + +V ++++T LK IV D+ + + K++K MH + IC
Sbjct: 2208 LVLGFTNYVIVYFLQLLLTSLKYYNWPIVFDQRYVETITKIIKAMHFIQKIC 2259
>UniRef50_A0Q0X4 Cluster: DNA recombinase, putative; n=1;
Clostridium novyi NT|Rep: DNA recombinase, putative -
Clostridium novyi (strain NT)
Length = 531
Score = 32.3 bits (70), Expect = 9.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 525 KKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 388
KK RK KG RKV+ G W PS + + KG H + ++K
Sbjct: 217 KKDNRKILKGKRKVSVSGIWSPSSILRMLHNTTYKGVHEYGKRSQK 262
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,910,162
Number of Sequences: 1657284
Number of extensions: 13287528
Number of successful extensions: 31754
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 30909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31743
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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