Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o08
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.66 
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.1  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +1

Query: 352 ILFVDSLSNTIDFLVHFSTVMIT 420
           +LF+   ++T+ F+++ ST++IT
Sbjct: 346 VLFIQVAADTVLFILNISTIIIT 368


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 434 VLVRKVIITVLK*TRKSIVLDKES 363
           +L  K I+T+LK T+ +I + KES
Sbjct: 85  LLYSKQIVTILKKTKSNIFILKES 108


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 292 TDGRFPPLW 266
           T+GR PP+W
Sbjct: 216 TEGRLPPVW 224


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 67  YTQEGSYSRRSCGY 26
           Y Q  +Y   SCGY
Sbjct: 338 YDQSSAYDASSCGY 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,928
Number of Sequences: 336
Number of extensions: 3347
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)