Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o08
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               183   1e-46
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         143   1e-34
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)                  28   6.8  
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  183 bits (445), Expect = 1e-46
 Identities = 85/108 (78%), Positives = 92/108 (85%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF+ DEMID I           T RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARA
Sbjct: 210 VFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARA 269

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 286
           GQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 270 GQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  143 bits (346), Expect = 1e-34
 Identities = 65/91 (71%), Positives = 74/91 (81%)
 Frame = -2

Query: 285 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 106
           GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 105 RFQTPADKAAFMGTLKKDRIREEAAATTTPA 13
           RFQ PA+K AFMG LK DR +E AA   + A
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKELAAGAESAA 305


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -2

Query: 420 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 286
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 360 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 235
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 268 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 429
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 216 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 67
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 333  NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 226
            ++STE++ + +     G F  +G+V ND   +  CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527


>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 277 ETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 441
           ETS R   FLRQ+ ++ C +   FA++ +     T + LV FS      L+  SY
Sbjct: 9   ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58


>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 377 LDKESTKRMAKLLKTMHLLSMICLRNP-LHRWEVS 276
           LDK     MA  +   HLLS+   RNP LH +E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,376,831
Number of Sequences: 59808
Number of extensions: 439041
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)