Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o08
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   356   2e-98
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   356   2e-98
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   356   2e-98
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   356   2e-98
BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   349   2e-96

>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  356 bits (875), Expect = 2e-98
 Identities = 166/199 (83%), Positives = 175/199 (87%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARA
Sbjct: 210 VFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARA 269

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
           GQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNND
Sbjct: 270 GQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNND 329

Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
           FVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFM
Sbjct: 330 FVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFM 389

Query: 69  GTLKKDRIREEAAATTTPA 13
           G LKKDR++EEAAATT  A
Sbjct: 390 GPLKKDRLKEEAAATTAAA 408


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  356 bits (875), Expect = 2e-98
 Identities = 166/199 (83%), Positives = 175/199 (87%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARA
Sbjct: 197 VFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARA 256

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
           GQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNND
Sbjct: 257 GQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNND 316

Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
           FVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFM
Sbjct: 317 FVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFM 376

Query: 69  GTLKKDRIREEAAATTTPA 13
           G LKKDR++EEAAATT  A
Sbjct: 377 GPLKKDRLKEEAAATTAAA 395


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  356 bits (875), Expect = 2e-98
 Identities = 166/199 (83%), Positives = 175/199 (87%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARA
Sbjct: 197 VFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARA 256

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
           GQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNND
Sbjct: 257 GQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNND 316

Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
           FVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFM
Sbjct: 317 FVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFM 376

Query: 69  GTLKKDRIREEAAATTTPA 13
           G LKKDR++EEAAATT  A
Sbjct: 377 GPLKKDRLKEEAAATTAAA 395


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  356 bits (875), Expect = 2e-98
 Identities = 166/199 (83%), Positives = 175/199 (87%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARA
Sbjct: 210 VFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARA 269

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
           GQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNND
Sbjct: 270 GQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNND 329

Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
           FVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFM
Sbjct: 330 FVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFM 389

Query: 69  GTLKKDRIREEAAATTTPA 13
           G LKKDR++EEAAATT  A
Sbjct: 390 GPLKKDRLKEEAAATTAAA 408


>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  349 bits (858), Expect = 2e-96
 Identities = 162/193 (83%), Positives = 171/193 (88%)
 Frame = -2

Query: 609 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 430
           VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARA
Sbjct: 221 VFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARA 280

Query: 429 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 250
           GQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNND
Sbjct: 281 GQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNND 340

Query: 249 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 70
           FVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFM
Sbjct: 341 FVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFM 400

Query: 69  GTLKKDRIREEAA 31
           G LKKDR++EEAA
Sbjct: 401 GPLKKDRLKEEAA 413


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,256,989
Number of Sequences: 53049
Number of extensions: 638592
Number of successful extensions: 1950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)