Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15o06
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 123 6e-30
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 0.30
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 1.6
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 2.1
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 2.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 3.7
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 3.7
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 4.8
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 24 6.4
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 23 8.5
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 23 8.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 23 8.5
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 123 bits (297), Expect = 6e-30
Identities = 59/95 (62%), Positives = 73/95 (76%)
Frame = -3
Query: 316 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 137
E+GA+GCEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQGVLG+KVK
Sbjct: 130 EAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVK 189
Query: 136 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEP 32
IMLP + K KK PD ++V +PK+E +P
Sbjct: 190 IMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 0.30
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 161 RSTRNQGQNHVAVGPAR----QERPEEATTRPHPGNRAQGRARAPRADQRSALPRAR 3
R T+ Q + V R QE EE+T P + GR+R R ALP R
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALPGLR 588
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 1.6
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 266 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 177
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 58 KDEPVPLEPTSEVRSLA 8
K+ PVPLEP EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 268 GQRAKSMKFVDGLMIHSGDPCNDYVN 191
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 211 PCNDYVNTATRHVL 170
PC+DYV A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 104 RPEEATTRPHP 72
+PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 289 VVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 176
++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1882 LLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 70 VTEPKDEPVPLEPTSEVRS 14
++EP D +P EP++ VRS
Sbjct: 1 MSEPYDPYIPAEPSAAVRS 19
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 173 HMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTT 301
HMS SS ++ ++ E + KL+ FG L Q ++ FT+
Sbjct: 127 HMSWSSKSE--GKMFKIPEELLNKLNGFGALEKQKKSFSFFTS 167
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 23.4 bits (48), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 109 KNGPKKPQPDHILVTEPKDEPVPL---EPTSEVRSLAPA 2
K PKK P+ +T P P+ L EP + ++ +PA
Sbjct: 163 KLSPKKTSPNSGYITSPLRHPILLSETEPGTPTKNDSPA 201
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -3
Query: 91 PQPDHILVTEPKDEPVPLEPTSEVRSLAP 5
P P ++V P P+P+ P + + P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,885
Number of Sequences: 5004
Number of extensions: 26271
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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