Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15o06
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   6.3  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 146  QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 27
            Q Q  +   P+  +R     T P P N  QG+A+A    Q
Sbjct: 980  QSQQPIMTDPSPFKRGRY--TPPQPANAQQGQAQAQAKPQ 1017


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 86   TRPHPGNRAQGRARAPRADQRSALPRAR 3
            T PHPGN   G    P     +A   +R
Sbjct: 1747 TFPHPGNGHSGTMGPPVGHPTNASAHSR 1774


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 83  RPHPGNRAQGRARAPRADQRSALPRAR 3
           R +PG  ++G    PR+ +  +LPR +
Sbjct: 55  RRNPGPGSKGPRDFPRSHRFKSLPRCQ 81


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 121 DRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRSL 11
           DR+ K    +   D     +PK++ +P E  ++ +SL
Sbjct: 129 DRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSL 165


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 238  DGLMIHSGDPCND 200
            D L+ H G P ND
Sbjct: 995  DVLVFHQGQPTND 1007


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 215 RPLQ*LRQHCYQTCASQTRSTRNQGQNHVAVGPARQERP 99
           RP Q  RQH       + ++   +GQ+ V  GP  +  P
Sbjct: 81  RPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGGRLSP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,128
Number of Sequences: 438
Number of extensions: 1864
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)