Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15o03
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 30 1.3
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 29 2.9
AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical ... 29 3.9
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 28 5.1
AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical... 28 6.8
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 28 6.8
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 27 8.9
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF016678-6|AAB66149.2| 236|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -1
Query: 589 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 452
+ K+ +E +R+R ++ TT +KY+ EL+ + +D + ++
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAE 421
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 619 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 479
K +T +L+S+ K+ TTE + + + I+YDS HY++
Sbjct: 83 KDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129
>AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical
protein C07F11.2 protein.
Length = 484
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 208 NSFNVAFKNCESILCRRISFQTVLMTCAVLLLLFNVEKFSM 86
N V + CE LC ++ + + TC +L LLFN F++
Sbjct: 364 NDLPVLKRACERYLCSELNSKKDIGTCLLLDLLFNSIVFNL 404
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -1
Query: 394 GASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILC--DECCKKELRDY 221
GA + Y VH S + P SQP + H+ LI + C +CC +R
Sbjct: 323 GALAVCIYCCLVHASTPFEAPMRPTSQP-SLLISHSYPLIFIISFFCGMSDCCINSVRSV 381
Query: 220 I 218
I
Sbjct: 382 I 382
>AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical
protein C18E3.9b protein.
Length = 302
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 604 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 446
+++ S+S++ S + + + KNL NK+K SE + + + K SDYA
Sbjct: 48 SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 604 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 446
+++ S+S++ S + + + KNL NK+K SE + + + K SDYA
Sbjct: 48 SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 598 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 455
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 598 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 455
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 598 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 455
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>AF016678-6|AAB66149.2| 236|Caenorhabditis elegans Hypothetical
protein K07E8.3 protein.
Length = 236
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 579 FFEIDSNSVGVFFLLIDSGGCVVFVVV 659
+F+ + N G+ FLL DS GC + +V
Sbjct: 26 YFQENKNGNGIHFLLTDSLGCSIKCIV 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,123
Number of Sequences: 27780
Number of extensions: 212358
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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