Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n23
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   1.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   1.4  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   1.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   3.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   3.1  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    24   3.1  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    23   7.2  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    23   7.2  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    22   9.6  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    22   9.6  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    22   9.6  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    22   9.6  
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    22   9.6  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 68  LELNLQRGRPLIYGRPRALGQRYYESEHGGRPLFSRPPRSPIVCLVA 208
           +E+ +  G+  I      +  ++ +S HGGR     P    ++C VA
Sbjct: 9   VEITVPTGKTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVA 55


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  LNLQRGRPLIYGRPRALGQRYYESEHGGRPLF 169
           + L+ G P++     + GQ + E+ HG  P F
Sbjct: 889 IKLEDGDPIVAYYDESTGQNFIETYHGTEPGF 920


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 157 ASIVLSAASLAYCLPS 204
           AS VLS  +L YC+PS
Sbjct: 68  ASDVLSTGNLTYCIPS 83


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 93  LPRCKFSSRQRAGESRPLQKKRREPSHK-KRL 1
           + R K SS QRA ++ P   +RR  SH  KR+
Sbjct: 58  MKRSKESSAQRAFQALPRCLRRRAASHNIKRI 89


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 126 PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKR 28
           PS++    ++ L R K  SRQ+   S PL+  R
Sbjct: 163 PSSKSDVNVQMLARLKSKSRQKISSSDPLEDLR 195


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 53  SPARCLELNLQRGRPLI 103
           SP  C++ NL+ G P++
Sbjct: 433 SPVNCIDWNLREGTPIL 449


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 169 EQWTPTVLGLIIALAECAWAT 107
           E WT  V   +I+LA+C   T
Sbjct: 132 ETWTKAVKVTVISLAQCVKVT 152


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 167 TMDAHRARTHNSAGRVRVGDHK 102
           T    + R H SAG  R+G H+
Sbjct: 5   TSKTRKLRGHVSAGHGRIGKHR 26


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 94  APYLWSPTRTRPA 132
           +P L+S TRTRPA
Sbjct: 315 SPSLFSDTRTRPA 327


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
 Frame = +2

Query: 92  RPLIYGRPRA---LGQRYYESEH-----GGRPLFSRPPRSPIV 196
           R + YGR R    L Q  Y S+      GG P+   PP SP++
Sbjct: 270 RRIYYGRDRCAVGLKQPAYFSKGQVGVVGGYPVMGYPPPSPVL 312


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 107 GRPRALGQRYYESEHGGRPLFSRP 178
           GRPR  G   YE+E       S+P
Sbjct: 285 GRPRGFGFVTYENESAVEATMSQP 308


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 169 EQWTPTVLGLIIALAECAWAT 107
           E WT  V   +I+LA+C   T
Sbjct: 132 ETWTKAVKVTVISLAKCVKVT 152


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 155 HRARTHNSAGRVRV 114
           HR R H+ AGR +V
Sbjct: 84  HRLRAHDEAGRKKV 97


>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 95  PLIYGRPRAL-GQRYYESEHGGRPLFSRPPRSPIVCLVALL 214
           P ++G    L GQ+Y      GR ++ +  +  I+C+   L
Sbjct: 55  PSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICVATKL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,297
Number of Sequences: 5004
Number of extensions: 10711
Number of successful extensions: 42
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)