Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n23
         (217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0436 - 17558603-17559265,17559322-17559384                       28   1.2  
07_01_0237 + 1732277-1732379,1732468-1732508,1732607-1732930           26   3.6  
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266     26   4.8  
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    26   4.8  
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728...    25   6.3  
10_08_0540 + 18635647-18635916                                         25   8.3  
08_02_1624 - 28334067-28335851                                         25   8.3  

>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 156 PPCSDS**RWPSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
           PPC     R PS+R    +R  P C  S  +   + +   ++R++   KKR
Sbjct: 190 PPCQ----RHPSSRASRAVRTTPPCCSSLAENIAQGKKTGERRKKMGEKKR 236


>07_01_0237 + 1732277-1732379,1732468-1732508,1732607-1732930
          Length = 155

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 26  LLFFWRGLDSPARCLELNLQRGRPLIYGRPRALGQRYYESEHGGRPLFSRPPRSPIVCL 202
           L+F      S AR L L L     +       +G++      G R + SRPPR   VC+
Sbjct: 23  LIFSMEVAHSDARRLPLKLLEVGNIKEEPDETIGEKMEMEMEGRRLIGSRPPRCERVCM 81


>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
          Length = 60

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = -2

Query: 126 PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
           P+   +  +RGLP+ K   +++  + +  +KK+++   KK+
Sbjct: 15  PAEPAKGGLRGLPKKKKKKKKKKKKKKKKKKKKKKKKKKKK 55


>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 143 SEHGGRPLFSRPPRSPIVCLVA 208
           S H  RP F  PP    +C+VA
Sbjct: 345 SSHVSRPAFRPPPARVTICIVA 366


>06_03_0794 -
           24671955-24672362,24672469-24672505,24672804-24672858,
           24674044-24674167,24674670-24674903
          Length = 285

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 101 IYGRPRALGQRYYESEHGGRPLFSRPPRSP 190
           +YG PR +G   Y     G+P+    P SP
Sbjct: 164 VYGGPRTVGPAVYPYGQFGQPVPGDQPYSP 193


>10_08_0540 + 18635647-18635916
          Length = 89

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  RGRPLIYGRPRALGQRYYE 142
           + RPL+  RP+AL + YY+
Sbjct: 60  KDRPLMLSRPQALPEYYYD 78


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  RGLDSPARCLELNLQRGRPLIY 106
           RG D P    +  L RGRPL+Y
Sbjct: 401 RGADGPVYTSDGILLRGRPLVY 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,381,770
Number of Sequences: 37544
Number of extensions: 95241
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)