Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n23
         (217 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for IM...    29   3.6  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    29   3.6  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    29   3.6  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     29   3.6  
AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.     27   8.3  

>BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for
           IMAGE:3875076) protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 126 PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
           P  R RP  +  PR + SS    G  R  +   R PSHK+R
Sbjct: 141 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR 181


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 126  PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
            P  R RP  +  PR + SS    G  R  +   R PSHK+R
Sbjct: 2695 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR 2735


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
          Length = 1275

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 126  PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
            P  R RP  +  PR + SS    G  R  +   R PSHK+R
Sbjct: 1218 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR 1258


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 126  PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 4
            P  R RP  +  PR + SS    G  R  +   R PSHK+R
Sbjct: 2743 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR 2783


>AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  RCKFSSRQRAGESRPLQKKRREPSHKKR 4
           R  FS ++R   S P  K+R E  HKK+
Sbjct: 242 RRSFSKKRRHSSSSPKSKRRDEKRHKKQ 269


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,811,362
Number of Sequences: 237096
Number of extensions: 480465
Number of successful extensions: 1358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 76,859,062
effective HSP length: 50
effective length of database: 65,004,262
effective search space used: 1365089502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)