Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n23
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    27   1.4  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    26   3.2  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    26   3.2  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    26   3.2  
Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    25   5.5  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 166 QWTPT-VLGLIIALAECAWATINKGPTSLQI 77
           Q  PT +LG+++++  C W+T+ +  T + I
Sbjct: 157 QGLPTAILGIVVSVVTCHWSTLTENGTYVSI 187


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  QRGRPLIYGRPRALGQRYYESEHGG 157
           QRG P  YG P   GQ  Y  ++GG
Sbjct: 234 QRGGPGAYGGPGGGGQGGYGGDYGG 258


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  QRGRPLIYGRPRALGQRYYESEHGG 157
           QRG P  YG P   GQ  Y  ++GG
Sbjct: 196 QRGGPGAYGGPGGGGQGGYGGDYGG 220


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  QRGRPLIYGRPRALGQRYYESEHGG 157
           QRG P  YG P   GQ  Y  ++GG
Sbjct: 234 QRGGPGAYGGPGGGGQGGYGGDYGG 258


>Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical
           protein F22B5.3 protein.
          Length = 389

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 139 IIALAECAWATINKGPTSLQIQFETASRRV 50
           ++ +  C +  +N GPT   +QF T  ++V
Sbjct: 148 VVPMPICKYEILNGGPTGEPVQFATIGQQV 177


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 170 RTMDAHRARTHNSAGRVRVGDHK*GAY 90
           R  DAHR R  +    +RV D   G Y
Sbjct: 369 RLADAHRKRAEDEVKNIRVVDENDGTY 395


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 107 GRPRALGQRYYESEHGGRPLFSRPPRSPI 193
           G+    G  ++      RP  +RPPR+P+
Sbjct: 47  GKKHGHGHHHHNHGRPSRPRPTRPPRAPV 75


>AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8b protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 38  WRGLDSPARC 67
           WR +DSPARC
Sbjct: 565 WRPIDSPARC 574


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 38  WRGLDSPARC 67
           WR +DSPARC
Sbjct: 588 WRPIDSPARC 597


>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 62  RCLELNLQRGRPLIYGRPRALGQRYYESEHGGRPLFSRPPRSP 190
           R  E  L  G+   Y   R+   RY+E ++G  P  S P RSP
Sbjct: 368 RLTEFELAGGQQAFY---RSFN-RYFEEQYGELPAPSLPLRSP 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,107,425
Number of Sequences: 27780
Number of extensions: 67739
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)