Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n23
         (217 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.31 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   2.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    19   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.31
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 143  SEHGGRPLFSRPPRSPIVCL 202
            S  GGRP+  RP R P V L
Sbjct: 1358 SASGGRPVPERPERVPTVDL 1377


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 102 FMVAHAHSASAIMSPSTVGVHCSLGRL 182
           +MV+ ++ A  +++  T  ++C +G L
Sbjct: 858 YMVSPSNDALFVLNGETRTINCEIGGL 884


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -2

Query: 90  PRCKFSSRQRAGESRPLQKKRREPSHKK 7
           PR +       G +RP+   +  P H +
Sbjct: 114 PRLRREPEAEPGNNRPVYIPQPRPPHPR 141



 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -2

Query: 90  PRCKFSSRQRAGESRPLQKKRREPSHKK 7
           PR +       G +RP+   +  P H +
Sbjct: 140 PRLRREPEAEPGNNRPVYIPQPRPPHPR 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,884
Number of Sequences: 438
Number of extensions: 757
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)