Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15n19
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 0.16
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 0.83
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 1.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 2.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 24 3.4
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 24 3.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 24 4.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 24 4.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 4.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 23 5.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 23 7.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 23 7.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 7.8
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.16
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 16 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 114
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 0.83
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 191 YLHYYIFKNYGVFEYCKSLTDHSLFTN 111
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 1.5
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 206 IVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST---KTSNLLLSKFKFTIEDF 36
I+ H++L + + Y +F CK T ++ L + + + S +L + +F+ +
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINM 318
Query: 35 DKINSN 18
+K +SN
Sbjct: 319 NKSSSN 324
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.6 bits (51), Expect = 2.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 170 KNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
K+ G F+ K SLF + + S+MS TSN + + DFDK
Sbjct: 645 KSVGKFDSAKYDEISSLFQSLILSSMSADTSNFSNQE----LVDFDK 687
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.2 bits (50), Expect = 3.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -3
Query: 224 YLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFK 54
YL L + E+ Y+HYY+ Y +F Y TD L L + K S FK
Sbjct: 682 YLHLGKLSEN-YIHYYVDSMYALFIYS---TDIPLKAEPLVPDLPVKQLKEKASHFK 734
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 24.2 bits (50), Expect = 3.4
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 239 VEATQYLT-LLLIVEHAYLHYYIFKNYGV 156
++ + +LT LLL + +AY+H ++ YG+
Sbjct: 10 IQKSPFLTKLLLPISNAYVHLSGYRKYGL 38
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 4.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 155 FEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSN 18
FE+C++ + NKL T N L+ F ++++ + SN
Sbjct: 958 FEFCEAFEKRNFLQNKLSGNPIISTPN-FLTHFALAYQEYE-LESN 1001
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 23.8 bits (49), Expect = 4.4
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 7 DVTEFEFILSKSSMVNLNLL-NSKLDVFVLIVDRNLLVKSEWSVSDL 144
++T +E + S + N++ +DV + +DR LV+ W V L
Sbjct: 874 NITLYEILYSSEEEMPSNVIFYETMDVSLSDLDRKRLVRLRWLVDGL 920
Score = 23.4 bits (48), Expect = 5.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 206 IVEHAYLHYYIFKNYGV-FEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFD 33
IV+ + H I + +G+ F + + + T KLR T+ + S KF + DFD
Sbjct: 1004 IVQVHHFHKDIARIHGIPFSFVIKPQEKFIDT-KLRLAARTQYPESIFSVIKFCVVDFD 1061
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 19 FEFILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSE 126
F+F+ S + LNLLN +L + V + + LV E
Sbjct: 610 FQFLFSPMDDILLNLLNKQLGIEVTEMTGSDLVYDE 645
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 161 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 72
G F K T SLF NK +T +T NL
Sbjct: 54 GAFGQTKPQTGGSLFGNKPNATSTTPGLNL 83
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 23.0 bits (47), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 4 PDVTEFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSEWSVS 138
PD +F +S N +S L ++ +DRN +K + S+S
Sbjct: 114 PDSVPGDFSISLVPQRNFLYSHSSLPPKIISIDRNNRIKLDNSIS 158
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.0 bits (47), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 158 VFEYCKSLTDHS-LFTNKLRS 99
VFE C ++T HS NKL S
Sbjct: 406 VFEICSTITSHSEQIFNKLES 426
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.0 bits (47), Expect = 7.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 125 SLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINS 21
SLFTN TK N LLS + +F NS
Sbjct: 107 SLFTNANPGLSYTKDENSLLSSKFLSQSNFKSYNS 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,167
Number of Sequences: 5004
Number of extensions: 17406
Number of successful extensions: 61
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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