Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15n19
(274 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 32 0.048
Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z92811-2|CAI46583.1| 299|Caenorhabditis elegans Hypothetical pr... 30 0.26
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 1.8
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 1.8
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 1.8
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 27 1.8
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 1.8
AC006693-6|AAF60383.2| 511|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006693-4|AAF60381.2| 511|Caenorhabditis elegans Hypothetical ... 27 2.4
Z78412-7|CAB01652.1| 495|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 26 4.2
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 26 4.2
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 26 4.2
L03524-1|AAA28152.1| 495|Caenorhabditis elegans protein-tyrosin... 26 4.2
U13019-11|AAC24449.1| 445|Caenorhabditis elegans Hypothetical p... 25 5.5
AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical ... 25 5.5
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 25 5.5
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 25 7.3
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 25 7.3
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 25 7.3
AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical ... 25 7.3
Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 25 9.7
U80843-3|AAB37967.3| 64|Caenorhabditis elegans Hypothetical pr... 25 9.7
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 25 9.7
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 25 9.7
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 25 9.7
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 25 9.7
U41026-4|AAA82351.2| 265|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 32.3 bits (70), Expect = 0.048
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 215 LLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 69
LL+I+ YYIF+ + E C S T HS+ L + +S+ NLL
Sbjct: 85 LLIIISFIIYFYYIFQASFIHEKCTSPTSHSML---LLAVLSSSIRNLL 130
>Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 263 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
LS+F +T E + + V H +LHYY ++ + SL SL TN ++S +
Sbjct: 78 LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133
>Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 263 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
LS+F +T E + + V H +LHYY ++ + SL SL TN ++S +
Sbjct: 78 LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133
>Z92811-2|CAI46583.1| 299|Caenorhabditis elegans Hypothetical
protein T01G1.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 197 HAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTS--NLLLSKFKFTIEDFDKIN 24
H Y ++ +G F CK++ ++ + + S+K S N K F+ D D I+
Sbjct: 237 HVYFDDVLWPEFGYFNLCKAILNYQYYRTTVTKMTSSKVSDDNATSWKMNFSGNDRDLIS 296
Query: 23 SNS 15
S
Sbjct: 297 VKS 299
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 33 VKIFNGKFEFA*Q*IRRFCAHCRSQF 110
V++FNGKF F R+F C QF
Sbjct: 889 VQLFNGKFFFCTDKNRKFANTCHGQF 914
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 33 VKIFNGKFEFA*Q*IRRFCAHCRSQF 110
V++FNGKF F R+F C QF
Sbjct: 889 VQLFNGKFFFCTDKNRKFANTCHGQF 914
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 33 VKIFNGKFEFA*Q*IRRFCAHCRSQF 110
V++FNGKF F R+F C QF
Sbjct: 1008 VQLFNGKFFFCTDKNRKFANTCHGQF 1033
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 33 VKIFNGKFEFA*Q*IRRFCAHCRSQF 110
V++FNGKF F R+F C QF
Sbjct: 495 VQLFNGKFFFCTDKNRKFANTCHGQF 520
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 33 VKIFNGKFEFA*Q*IRRFCAHCRSQF 110
V++FNGKF F R+F C QF
Sbjct: 1008 VQLFNGKFFFCTDKNRKFANTCHGQF 1033
>AC006693-6|AAF60383.2| 511|Caenorhabditis elegans Hypothetical
protein W02H5.3 protein.
Length = 511
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 152 EYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNSVT 9
EY K + D+ L+ K+RS + S++ S DF SNS+T
Sbjct: 210 EYSKKIVDYILYVEKMRSENNYANSHIFASDETAVYLDF----SNSLT 253
>AC006693-4|AAF60381.2| 511|Caenorhabditis elegans Hypothetical
protein W02H5.4 protein.
Length = 511
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 152 EYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNSVT 9
EY K + D+ L+ K+RS + S++ S DF SNS+T
Sbjct: 210 EYSKKIVDYILYVEKMRSENNYANSHIFASDETAVYLDF----SNSLT 253
>Z78412-7|CAB01652.1| 495|Caenorhabditis elegans Hypothetical
protein M176.7 protein.
Length = 495
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 182 YYIFKNYGVFEYCKSLTDHSLFTN 111
+++F YG F +C+S+ D ++ N
Sbjct: 6 FFVFLIYGFFPHCQSINDGNIKIN 29
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 269 MDLSDFSITEVEATQYLTLLLIVE 198
MD+SD S+ +VE+ +LT L E
Sbjct: 12 MDISDASVADVESKDFLTSLFDCE 35
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 269 MDLSDFSITEVEATQYLTLLLIVE 198
MD+SD S+ +VE+ +LT L E
Sbjct: 12 MDISDASVADVESKDFLTSLFDCE 35
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 25 FILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSEWSVSDLQYSN 156
F+L KS +V+ N + VF + + ++S + + +LQY N
Sbjct: 125 FLLEKSRVVHQNEGDRNFHVFYQLCAGDKNLRSTFGIGELQYYN 168
>L03524-1|AAA28152.1| 495|Caenorhabditis elegans protein-tyrosine
kinase protein.
Length = 495
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 182 YYIFKNYGVFEYCKSLTDHSLFTN 111
+++F YG F +C+S+ D ++ N
Sbjct: 6 FFVFLIYGFFPHCQSINDGNIKIN 29
>U13019-11|AAC24449.1| 445|Caenorhabditis elegans Hypothetical
protein T12A2.1 protein.
Length = 445
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 7 DVTEFEFILSKSSMVNLNLLNSKLDVFVLIVDRN 108
DVTEF L M N+ +LN + V++VD N
Sbjct: 19 DVTEF---LIGDQMNNIKILNDSSNSLVILVDTN 49
>AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical
protein W06D4.4 protein.
Length = 630
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 191 YLHYYIFKNYGVFEYCKSLTD 129
Y+HYY N + E SLTD
Sbjct: 402 YIHYYKLTNVEIIEKVTSLTD 422
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 191 YLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 69
Y + IFK Y L + F + LR +S K NLL
Sbjct: 61 YARFKIFKTYQTLSTLAILPKMTKFPSDLRENISYKLLNLL 101
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 242 EVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
E + + LTL I A +Y N V E+ L DH + ++L ++
Sbjct: 1257 EGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLMDHCMVHSRLAPSL 1306
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 242 EVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
E + + LTL I A +Y N V E+ L DH + ++L ++
Sbjct: 1263 EGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLMDHCMVHSRLAPSL 1312
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 242 EVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
E + + LTL I A +Y N V E+ L DH + ++L ++
Sbjct: 1263 EGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLMDHCMVHSRLAPSL 1312
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 78 RRFCAHCRSQFVGKKRMVR*RLAIFKHPVIFKNIIMQIGMFDDQQQ 215
R+F Q++ KKRM+ RLA+ + I + + + F+ +Q+
Sbjct: 291 RKFQGTDLLQYLKKKRMLERRLAMGQGEEILRKYVHAVEKFEREQE 336
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 242 EVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 93
E + + LTL I A +Y N V E+ L DH + ++L ++
Sbjct: 1263 EGQEEENLTLATIFVSAISKHYFHSNERVREFAIGLMDHCMVHSRLAPSL 1312
>AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical
protein C53A3.1 protein.
Length = 304
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -3
Query: 188 LHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
++ Y+ K Y ++ S+ HS + ++LR ++ +T F F D K
Sbjct: 116 MNNYLAKYYPAHKWSHSICHHSFWIDELRRLVNFRTDPHTYYNFNFIPYDEPK 168
>Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical
protein Y6G8.4 protein.
Length = 328
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 218 TLLLIVEHAYLHYYIF-KNYGVFEY 147
TL+ +HAYL+ Y+F +N VF +
Sbjct: 226 TLMYSQQHAYLYRYVFWQNVLVFSF 250
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 DQQQS*ILSGFNLSYAKIAQIH 269
D+ S I+SG NL+Y +AQ H
Sbjct: 243 DKDWSAIVSGKNLAYQALAQYH 264
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 DQQQS*ILSGFNLSYAKIAQIH 269
D+ S I+SG NL+Y +AQ H
Sbjct: 243 DKDWSAIVSGKNLAYQALAQYH 264
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 DQQQS*ILSGFNLSYAKIAQIH 269
D+ S I+SG NL+Y +AQ H
Sbjct: 243 DKDWSAIVSGKNLAYQALAQYH 264
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 DQQQS*ILSGFNLSYAKIAQIH 269
D+ S I+SG NL+Y +AQ H
Sbjct: 243 DKDWSAIVSGKNLAYQALAQYH 264
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 203 VEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLR 102
V +A HYY N+G YC S+ F R
Sbjct: 19 VNNANEHYYGLVNFGNTCYCNSVIQALFFCRPFR 52
>U80843-3|AAB37967.3| 64|Caenorhabditis elegans Hypothetical
protein C32B5.12 protein.
Length = 64
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 140 SLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFD 33
SLT H K + ++ TS L L +FK T +DF+
Sbjct: 29 SLTVHPSALPKNQFPFTSSTSELHLIQFKSTKQDFN 64
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 DQQQS*ILSGFNLSYAKIAQIH 269
D+ S I+SG NL+Y +AQ H
Sbjct: 243 DKDWSAIVSGKNLAYQALAQYH 264
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 209 LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
L E A + + KN +FE S N+ + S TSNL FT E +
Sbjct: 1106 LDAEMAAMREQLMKNVDLFESSTFQKRPSQKKNRDDDSCSRTTSNLSQLTGSFTAETING 1165
Query: 29 INSNS 15
++S S
Sbjct: 1166 VHSTS 1170
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 209 LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
L E A + + KN +FE S N+ + S TSNL FT E +
Sbjct: 1108 LDAEMAAMREQLMKNVDLFESSTFQKRPSQKKNRDDDSCSRTTSNLSQLTGSFTAETING 1167
Query: 29 INSNS 15
++S S
Sbjct: 1168 VHSTS 1172
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 209 LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 30
L E A + + KN +FE S N+ + S TSNL FT E +
Sbjct: 1108 LDAEMAAMREQLMKNVDLFESSTFQKRPSQKKNRDDDSCSRTTSNLSQLTGSFTAETING 1167
Query: 29 INSNS 15
++S S
Sbjct: 1168 VHSTS 1172
>U41026-4|AAA82351.2| 265|Caenorhabditis elegans Hypothetical
protein C28G1.2 protein.
Length = 265
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 19 FEFILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSEWSVSDLQYSNTP 162
FE + +S++ + ++ KLDV L+++ +L + L+Y +P
Sbjct: 178 FEKLFQESTVQLVQIMIPKLDVLQLLINSKVLGLQPPIKTSLKYKESP 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,476,124
Number of Sequences: 27780
Number of extensions: 93173
Number of successful extensions: 255
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -