Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n18
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 213 VNDYEMTRLNRTQSTNRLLAL-KLYNLNKTD 302
           VNDYE+   N  +S++RL +L + Y +N T+
Sbjct: 580 VNDYEIEIKNAEESSSRLYSLFERYKINDTE 610


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 351  DKY-HMLKTFKTLSCKISQFC*DYTVLMRADDLCFVSDLIESFRNRS 214
            +KY +  K +    CK  +   DYT +   +D+  ++D+ E+FRN S
Sbjct: 884  EKYEYAQKVWNETKCKNLK---DYTEIYMINDVLLLADIFETFRNVS 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,370
Number of Sequences: 27780
Number of extensions: 167425
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)