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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n15
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...   115   8e-27
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    57   2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    54   3e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    44   2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    35   0.014
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    35   0.014
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    30   0.29 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   0.39 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   0.68 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   2.1  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.6  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   6.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   6.3  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   8.3  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   8.3  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.3  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score =  115 bits (276), Expect = 8e-27
 Identities = 58/146 (39%), Positives = 75/146 (51%), Gaps = 13/146 (8%)
 Frame = -1

Query: 725 CNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNGTGH 552
           C   GH ARECT+G +             C+ CN+TGH A +C E  +   CY C   GH
Sbjct: 22  CGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGTAGH 68

Query: 551 IARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSGHIS 405
           + R+C  SP+      CY C + GHIAR+C   G++S        +   CY C   GH +
Sbjct: 69  LVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQA 128

Query: 404 RNCPDGTKTCYVCGKPGHISRECDEA 327
           R+C  G K CY CGK GH S EC +A
Sbjct: 129 RDCTMGVK-CYSCGKIGHRSFECQQA 153



 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
 Frame = -1

Query: 653 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 474
           R   +C+ C   GH AR+C +    CY CN TGH A EC +   E +CY C   GH+ R+
Sbjct: 14  RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72

Query: 473 CPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 336
           CP          CY C + GHI+R+C  +G ++            CY CG  GH +R+C
Sbjct: 73  CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 51/138 (36%), Positives = 64/138 (46%), Gaps = 28/138 (20%)
 Frame = -1

Query: 725 CNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTGHFARDCKE 591
           CN+TGH A ECT+             G + RD   S   RQ  +C+KC R GH ARDC+ 
Sbjct: 41  CNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRT 100

Query: 590 EADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRES 450
              +             CY C   GH AR+C        CY+C K GH +  C +    S
Sbjct: 101 NGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---S 154

Query: 449 ATQTCYNCNKSGHISRNC 396
             Q CY CN+ GHI+ NC
Sbjct: 155 DGQLCYKCNQPGHIAVNC 172



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = -1

Query: 518 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 345
           P CYNC + GH AR C +G        CYNCN++GH +  C  P   KTCY CG  GH+ 
Sbjct: 17  PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70

Query: 344 RECDEARN 321
           R+C  + N
Sbjct: 71  RDCPSSPN 78


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
 Frame = -1

Query: 653 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 492
           R R+K CF C + GH  +DC E  D    C+RC    H    C+ + P +   C+ C++ 
Sbjct: 73  RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132

Query: 491 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 381
           GH++  C +   G       C  C+   H++++C    K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -1

Query: 545 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 378
           R   Q   +  C+ C + GHI ++CPE   +     C+ C    H    C    P     
Sbjct: 68  RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125

Query: 377 CYVCGKPGHISRECDE 330
           C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
 Frame = -1

Query: 707 FARECTQGGVVSRDSGFNRQREK-CFKCNRTGHFARDCKEEAD----RCYRCNGTGHIAR 543
           F   C Q G + +D    +     CF+C    H    C ++      +C+ C+  GH++ 
Sbjct: 78  FCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSG 137

Query: 542 ECAQSPDE--PS---CYNCNKTGHIARNCPEGGRESAT 444
           +C Q+P    P    C  C+   H+A++C +  ++  +
Sbjct: 138 QCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175



 Score = 28.7 bits (61), Expect = 0.89
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 383 KTCYVCGKPGHISRECDEARN 321
           K C+ C + GHI ++C EA++
Sbjct: 77  KFCFACRQQGHIVQDCPEAKD 97


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -1

Query: 638 CFKCNRTGHFARDCKEEADRCYRCNG-TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 462
           C  C   GH ++DC      C  C     HI+  C   P    C NC   GHIA  C E 
Sbjct: 89  CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142

Query: 461 GRESATQTCYNCNKSGHISRNCP 393
            R+   + C  C+   H S  CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 512 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 336
           C+NC   GHI+++CP          C  C     HIS  CP  TK C  CG  GHI+  C
Sbjct: 89  CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140

Query: 335 DEAR 324
            E R
Sbjct: 141 SEPR 144



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = -1

Query: 626 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 450
           +R  +F  D   E+  C+ C G GHI+++C        C  C     HI+  CP      
Sbjct: 74  SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122

Query: 449 ATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 336
            T+ C NC   GHI+  C +    G + C  C    H S  C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164



 Score = 34.3 bits (75), Expect = 0.018
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 6/124 (4%)
 Frame = -1

Query: 725 CNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 564
           C   GH +++C      T G +    S      +KC  C   GH A  C E   R  R  
Sbjct: 92  CKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVC 151

Query: 563 GTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT 384
            T H     + +      Y   K   +  +  E       + CYNC    H   +C   +
Sbjct: 152 RTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGDDCTLPS 206

Query: 383 KTCY 372
           ++ Y
Sbjct: 207 RSNY 210


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 512 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 393
           C NC   GH   +CPE    +    C +C   GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 458 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 306
           R+   Q C NC   GH   +CP+         C  CG  GHI+R+C   R+  QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -1

Query: 650 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 516
           + + C  C   GH   DC E  +      C  C   GHIAR+C     +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 413  HISRNCPDGTKTCYVCGKPGHISREC 336
            H  + CP    TCY CGK  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 614  HFARDCKEEADRCYRCNGTGHIAREC 537
            H  + C      CY+C    H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 413  HISRNCPDGTKTCYVCGKPGHISREC 336
            H  + CP    TCY CGK  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 614  HFARDCKEEADRCYRCNGTGHIAREC 537
            H  + C      CY+C    H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -1

Query: 476 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 366
           +CP+G  E  T  C+N    C  +G+IS   P       VC
Sbjct: 66  DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 533 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 363
           ++ ++P+  N  +      N       + T TC NC  ++  + R  PDG   C  CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 461  GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 357
            GR+  T+ C NC + GH+  N     K C + G+P
Sbjct: 939  GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 533  QSPDEPSCYNCNKTGHIARN--CPEGGR 456
            + P    C NC + GH+  N  CP  GR
Sbjct: 940  RKPTTRKCSNCGQVGHMKTNKICPLFGR 967


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 656 NRQREKCFKCNRTGHFARDCKEEA 585
           +RQ  KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 638 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 513
           C++C + GH+ + C   AD  Y    R   T  I R   ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
 Frame = -1

Query: 545 RECAQSPDEPS-----CYNCNKTGHIARNCP 468
           R  A  PD+P      CY C + GH  + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 437 CYNCNKSGHISRNCPDGTKTCYVCGKP 357
           CY C + GH  + CP      Y  GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 428  SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 592
            S S ++S TP P   SS+   P+  S  TTA+   ++   LC         Y C N Q  
Sbjct: 843  SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899

Query: 593  P 595
            P
Sbjct: 900  P 900


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 250
           Y +T EP  ++ GA+  L  +  R   +A+G+L
Sbjct: 50  YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 KNKHERASTRPSIYKSTVEPHSS 181
           K+KH   S+    YK+ VEPH S
Sbjct: 16  KSKHASKSSLKEKYKNEVEPHRS 38


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 646 VRSASSATAQDTLRGIARKRLTVA 575
           VRSA S+  Q T R +A+  +TVA
Sbjct: 50  VRSARSSMEQPTFRPVAKNSVTVA 73


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 464 GGRESATQTCYNCNKSG 414
           GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 395 PDGTKTCYVCGKPGHISRECDEARN 321
           PDGT   YV  +PG IS    +A N
Sbjct: 64  PDGTTMVYVFPRPGTISPWSSKATN 88


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 428 SYSRSASQTPAPPRDSSVRCGPSCCSCN 511
           +YS +   T APP  SS   G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,345
Number of Sequences: 5004
Number of extensions: 51609
Number of successful extensions: 233
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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