Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n14
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   150   5e-37
AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical...    30   0.93 
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   6.5  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   6.5  
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  150 bits (363), Expect = 5e-37
 Identities = 65/84 (77%), Positives = 79/84 (94%)
 Frame = -1

Query: 297 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 118
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 117 DRFQMRIHKRVIDLHSPSEIVKQI 46
           DRFQMRIHKR+I+LH+P+E+++QI
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQI 100


>AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical
           protein T03D3.1 protein.
          Length = 515

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 16  LHRARWLIEXDLFHNFRGRV*VDHSLVDSHLKT 114
           +HR  WL + +L H+ R ++ + H  ++S+L+T
Sbjct: 343 IHRLEWLPQTELLHDNRVKLFISHMGLNSYLET 375


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 255 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 133
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 324  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 214
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 231 INGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIV 55
           I+G K+   R+K    M  K ++I   +TP  E  K    R + RI KR  ++H  +   
Sbjct: 50  IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108

Query: 54  KQIXLN 37
           +QI +N
Sbjct: 109 QQIMMN 114


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 257 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 352
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 360 MAAAVVSGKDIEKPQAEVSPIH 295
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 360 MAAAVVSGKDIEKPQAEVSPIH 295
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 60  FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 155
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 60  FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 155
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 145
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,031
Number of Sequences: 27780
Number of extensions: 227122
Number of successful extensions: 492
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)