Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15n12
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 58 2e-09
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 56 1e-08
05_04_0084 - 17788077-17789240 32 0.11
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 0.34
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 30 0.44
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 30 0.59
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 28 2.4
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 28 2.4
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 27 3.1
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 3.1
02_01_0475 + 3422629-3422695,3422960-3423216 27 3.1
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 27 4.1
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 27 4.1
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 27 5.5
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 26 7.2
04_03_0661 - 18468244-18469580,18469610-18469619 26 7.2
03_02_1022 + 13260647-13260834,13260965-13261070,13262052-132621... 26 7.2
03_03_0163 - 14971398-14971562,14971638-14971664 26 9.6
02_04_0103 - 19768288-19768737 26 9.6
01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598... 26 9.6
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 26 9.6
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 26 9.6
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -3
Query: 289 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQ 176
GFVK K YFKR+QVKFKRRR+GKTDY AR RL Q
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQ 40
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = -3
Query: 175 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 26
+E++YKK H AIRADP+ K KK+ KR+N +KLT +RK + ++
Sbjct: 233 MESLYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRKASLVER 281
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -3
Query: 289 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQ 176
GFVK K Y KR+QVKFKRRR+GKTDY AR RL Q
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQ 40
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = -3
Query: 175 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 26
+EA+YKK H AIRADP+ K KK+ KR+N +KLT +RK + ++
Sbjct: 233 MEALYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRKASLVER 281
>05_04_0084 - 17788077-17789240
Length = 387
Score = 32.3 bits (70), Expect = 0.11
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = -3
Query: 274 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDS 95
+KNK K+ + KR ++ K D +L + A + A E + DP K+ +KKD
Sbjct: 266 IKNK---KKALEEAKRMQQAKEDPEKATKLAWDL-ARRRAAGEKVHDDPKLIKESMKKDK 321
Query: 94 VKQKR----WNKRKLTLAERKNRIKQKKASFIK 8
+Q++ W +R+ + ++K + K+ I+
Sbjct: 322 KRQQKHAEQWKERQKMVDKQKKERQSKRTENIR 354
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 121 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 23
KKK+ KK K+K+ NK+K ++K + K+KK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 29.9 bits (64), Expect = 0.59
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 166 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 11
+ KK + + KKK+ KK + K+K+ K+K ++K R KA I
Sbjct: 66 VMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQHI 117
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 121 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 5
KKK+ KK K+K+ K+K ++K + K+KK KR
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 30.3 bits (65), Expect = 0.44
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -3
Query: 196 RKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 23
R L +E KKA ++ P KKK+ KK K+K+ K+K E ++ ++Q+K
Sbjct: 33 RAELKKILELRKKKAKAKVKKKP--KKKKNKKAKKKKKKKKKKKKEEEEEESDVRQQK 88
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 29.9 bits (64), Expect = 0.59
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -3
Query: 214 KTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRI 35
K Y +KRL +Q + KK EA + DP + + KK +KQK + + L + +
Sbjct: 87 KRGYLTKKRLKLQRKREKKKRKEANKNDPRRIRPKGKK--IKQK-FPTPEARLKYKIEKA 143
Query: 34 KQKKASFIKRL 2
K K+A +++L
Sbjct: 144 KLKEAMLVEKL 154
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 128 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 24
+P E+ V ER + E LE + I EEK+ + +E
Sbjct: 518 LPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -3
Query: 232 KRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLT 59
+RRRE K + R+R + +KA EA+ ADP ++ +EL++ +R
Sbjct: 20 ERRRERKKE--RRRRARREAAEAARKAAEALAADPEEERRLRELEEAEADASERARRAFE 77
Query: 58 LAERK 44
AER+
Sbjct: 78 DAERR 82
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 85 KRWNKRKLTLAERKNRIKQKK 23
+RW K KL+ +ERK R ++ K
Sbjct: 229 ERWKKEKLSKSERKRRAREAK 249
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 103 KDSVKQKRWNKRKLTLAERKNRIKQKKASFI 11
KD KQK + K +L L ERK + K+ F+
Sbjct: 142 KDERKQKVFYKNQLELEERKKKALDKQLDFL 172
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 178 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKA 20
+++ + + A+ + KKK+ KK K+K+ K+K ++K + K A
Sbjct: 25 RVQVVLQLAYTIFGFEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSA 77
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 178 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 26
++EA A E+ R KKE KKDS + + W+++K L E K K
Sbjct: 414 EMEAAKLSASESERQCQKLVKKE-KKDSKRLEMWDRQKAKLQEDIAECKTK 463
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 139 RADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 11
R +PS K KK K+K+ K+K ++K + K+KK F+
Sbjct: 363 RLNPSKTIKRKKKKKKKKKK--KKKKKKKKKKKKKKKKKLRFV 403
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 148 EAIRADPS----HKKKELKKDSVKQKRWNKRKLTLAERK 44
EA+ +PS HKKKE KK+ +K+ K + ++K
Sbjct: 212 EALDGEPSSPELHKKKEKKKEKSSEKKDRKERRKKKDKK 250
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 154 AHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 44
A +R P KKK+ KK K+K+ K+K ++K
Sbjct: 19 AKGGLRGLPKKKKKKKKKKKKKKKKKKKKKKKKKKKK 55
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 26.2 bits (55), Expect = 7.2
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = -3
Query: 283 VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRA-DPSHKKKEL 107
V+ + + Y K +++ +R+ E K + RK + + ++ EA RA + K+KE
Sbjct: 68 VRTLVDNAYKKDPRIQ-RRKEEEKAEKQRRKEAKYLAKKMQEE--EAARAAEEERKRKEE 124
Query: 106 KKDSVKQKRWNKRKLTLAERKNRIKQK 26
+ + N++KL E+K K+K
Sbjct: 125 EAKRAAEAALNQKKLKEKEKKLLRKEK 151
>03_02_1022 +
13260647-13260834,13260965-13261070,13262052-13262169,
13262271-13262539
Length = 226
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 121 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 2
+KK+ +K++ K + +RK + ERK R ++K+ + R+
Sbjct: 72 RKKKRRKEAQKILQEKERKKRIEERKRRKQEKEIALYGRV 111
>03_03_0163 - 14971398-14971562,14971638-14971664
Length = 63
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 169 AIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 65
AIY A + PS KKK+ KK K+K+ K+K
Sbjct: 4 AIYA-AGDTTNFMPSKKKKKKKKKKKKKKKKKKKK 37
>02_04_0103 - 19768288-19768737
Length = 149
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 142 IRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 23
+R K+K +K K+K+ K+K ++K + K+KK
Sbjct: 100 MREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKK 139
>01_03_0286 -
14657682-14657803,14658194-14658419,14659894-14659899,
14661218-14661298,14662498-14662888,14663207-14663352,
14665455-14665562
Length = 359
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 244 QVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 65
Q++ R+G ++ AR R+ Q+ +KK+ I D S E K+ + R
Sbjct: 139 QIERLMSRDGCSEEQARNRINAQLALDWKKSQADIVIDNSGTLDETKEKFQEVLRNVSEP 198
Query: 64 LTLAER 47
LT ER
Sbjct: 199 LTWKER 204
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 256 FKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADP 128
FK + KFK E K D Y R +++ +K + + A+P
Sbjct: 239 FKHFAAKFKD--EYKIDVYQNARACIRLRVACEKLKKVLSANP 279
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 140 DGFMGFLVDGFNLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESH 292
D F G V G +NN +TS ++++ T+P Y + +LF+ H + H
Sbjct: 127 DSFRGRCVAGA-INN--YTSQLLTYDATSPSTQYNLTQALLFLAHFVGDIH 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,580
Number of Sequences: 37544
Number of extensions: 152490
Number of successful extensions: 633
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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