Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n11
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   305   2e-85
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   297   5e-83
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   229   2e-62
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    89   4e-20
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.6  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  305 bits (749), Expect = 2e-85
 Identities = 143/155 (92%), Positives = 147/155 (94%)
 Frame = -1

Query: 714 VKXVEMHHEAFQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 535
           VK VEMHHEA QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN
Sbjct: 289 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 348

Query: 534 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 355
           HPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSK
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSK 408

Query: 354 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 250
           P+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 409 PMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  297 bits (730), Expect = 5e-83
 Identities = 138/155 (89%), Positives = 146/155 (94%)
 Frame = -1

Query: 714 VKXVEMHHEAFQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 535
           VK VEMHHEA  EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLN
Sbjct: 289 VKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLN 348

Query: 534 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 355
           HPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 408

Query: 354 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 250
           P+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 409 PMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  229 bits (560), Expect = 2e-62
 Identities = 106/119 (89%), Positives = 111/119 (93%)
 Frame = -1

Query: 711 KXVEMHHEAFQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 532
           K VEMHHEA  EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 531 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 355
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 89.0 bits (211), Expect = 4e-20
 Identities = 41/43 (95%), Positives = 41/43 (95%)
 Frame = -1

Query: 714 VKXVEMHHEAFQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 586
           VK VEMHHEA QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 232 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 KYRSCMKNCAVNSSSYFLPLVAFS 214
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 KYRSCMKNCAVNSSSYFLPLVAFS 214
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 KYRSCMKNCAVNSSSYFLPLVAFS 214
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 CSPFFLRNTFR*MKYRSCMKN 166
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 633 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 526
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 514 RLHTSLGLPHCPHC 473
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 430 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 609
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 610 TTT 618
           T T
Sbjct: 137 TVT 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 430 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 609
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 610 TTT 618
           T T
Sbjct: 137 TVT 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,183
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)