Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n09
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.012
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   3.1  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.4  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 457 LILTAATCWLFWLCAYMAQMNPLIGP 380
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 97  FVANFYNLCRGTVISNFDCSIIFFS 23
           FV     +C+ T+ ++  C IIFFS
Sbjct: 436 FVNRIQRVCKHTIFASNPCRIIFFS 460


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 511 GVLTKVFIKNRFRIIQVVLILTAATCWLFW 422
           GVL KVF   R  I   +  LT A C + W
Sbjct: 356 GVLCKVFKNGRLLIGVFMNCLTLAGCLMIW 385


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 479 FQDYSSGVNINSSDLLVVLAVCLHGTDEPSHRAQT 375
           F       +I ++   ++  +CLHGT E + +A T
Sbjct: 694 FSKRKKNFSIQTTTAEILRKLCLHGTQEQAKQAAT 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,904
Number of Sequences: 5004
Number of extensions: 38436
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)