Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n07
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    28   1.2  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   1.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   3.7  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   4.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.6  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 103 INLFVSCLSAVKLIKPNFGSQIALSFV-RQPSSVR 204
           +NL ++CL+ + LI P F +Q  LSF+ R PS ++
Sbjct: 203 VNLGIACLNGLYLISP-FCNQQPLSFINRHPSILK 236


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 281 HLTIFKSASGGEAQYKYIQHDKSHSQYISQLTSS----MLCLVENNSTFYDPSKGNIK 442
           HL + +    G + YK + H  + S++I +L S      L LV+  + FYDPS  +I+
Sbjct: 339 HLLLGRLLDCGVSIYKSV-HSLTVSKFIDKLESYESQLSLILVDIEAKFYDPSNEDIQ 395


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 191 GWRTKLNAIWEPKLGLISFTAERQLTNRLILKSIDQ 84
           G  TKLN +W  + G+  F A   L  RL ++  +Q
Sbjct: 215 GEYTKLNGVWRIQFGIALFPAVIVLIPRLRMQESEQ 250


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 314 EAQYKYIQHDKSHSQYISQL 373
           E QYK++ HD+S++  +S++
Sbjct: 529 ENQYKHLAHDRSYTDAVSKI 548


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 551 SINCIQKKPFLSLIMT*VVLIMVPILLENLQYLNYFF*CFLSKDRKT 411
           S++C+      S  +T VVL   PI++  + ++N F      KDRK+
Sbjct: 239 SLSCLIISFRYSWSLTLVVLASYPIIILVVGFINSFLSSAYEKDRKS 285


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 257 LILNQLDEHLTIFKSASGGEAQYKYIQHDKSHSQYISQLTSSMLCLVENNS 409
           L L  + +HL    S     +Q++ I   ++HS Y++QLTS+    +E NS
Sbjct: 693 LYLGDIQDHLVTMTS---NLSQFEKIL-SRTHSNYLAQLTSNS---IEENS 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,232
Number of Sequences: 5004
Number of extensions: 43076
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)