Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n07
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723...    27   8.9  
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    27   8.9  

>07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,
            7232513-7232551,7232734-7234057,7238145-7238189,
            7238456-7238498,7238680-7238716,7239035-7239325,
            7239634-7239685,7239690-7239773,7240064-7240137,
            7240703-7241641
          Length = 1169

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 410  LSCSQRDTTLTM*AVICTGNVICRVGCICTEPRRQRR 300
            +S   R+  L +   I  G V C  GC+C EP+  ++
Sbjct: 1019 MSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKK 1055


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 298 KRLWRRGSVQIHPTRQITFPVHITAHIVNVV 390
           +R +R   + I PTR++TFPV     + +VV
Sbjct: 428 RRKYRISGLTIQPTRELTFPVDEGGTVKSVV 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,439
Number of Sequences: 37544
Number of extensions: 235543
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)