Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n07
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    29   2.0  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      29   2.0  
AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm rece...    29   2.6  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    27   8.0  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   8.0  

>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 20/68 (29%), Positives = 39/68 (57%)
 Frame = +2

Query: 257 LILNQLDEHLTIFKSASGGEAQYKYIQHDKSHSQYISQLTSSMLCLVENNSTFYDPSKGN 436
           L  NQ++E  + + SA+  +AQ  YIQ++ + S   +Q T ++  ++ N +T     +G 
Sbjct: 256 LTTNQINEQASNWASANSVQAQ--YIQYETNRSAIHTQATQNVSDIINNLATVQASIEG- 312

Query: 437 IKKNNSNT 460
           I+ N S++
Sbjct: 313 IQSNTSSS 320


>Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical
           protein F44D12.9 protein.
          Length = 449

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 459 VFELFFLM-FPFEGS*NVELFSTR--HNIDDVSCDMYWECDLSCWMYLY 322
           +F L+FL+  PF      +    R    +D+ S   YWEC   CW+ L+
Sbjct: 225 LFSLYFLVRLPFYQYYMAKGVEARAEEKVDNPSIRQYWECFRMCWVQLF 273


>Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical
           protein T05H10.8 protein.
          Length = 377

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 311 GEAQYKYIQHDKSHS-----QYISQLTSSMLCLVE--NNSTFYDPSKGNIKKNNSNTVSF 469
           GE  YK+I+ DKS S     + +  + +     +E  NNST   P  GN+ K NS  +S 
Sbjct: 303 GEILYKHIEDDKSDSWPDIDEIVKLVEARNAKYLESTNNSTISIPKGGNLAKVNSE-ISV 361

Query: 470 PIELA 484
             ELA
Sbjct: 362 TKELA 366


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 531 KTLP*LNNDISCINHGANSIGKLTVFELFFLM 436
           K  P  +N +SC +  +N  G+  +  LFFLM
Sbjct: 359 KACPVRSNSLSCKHRHSNKTGRALIINLFFLM 390


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 531 KTLP*LNNDISCINHGANSIGKLTVFELFFLM 436
           K  P  +N +SC +  +N  G+  +  LFFLM
Sbjct: 359 KACPVRSNSLSCKHRHSNKTGRALIINLFFLM 390


>AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 160 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 587 FICLNYF-ICPQYSINCI-QKKPFLSLIMT*VVLIMVPILLENLQYLNYFF*CFLSKDRK 414
           FI   +F ICP + +N     KP +S+    + L  +P++    +Y N F+   L   R+
Sbjct: 265 FIPTGFFLICPLFGLNIQWSNKPIISMYSLYIALDSIPVIFLVDEYRNAFYNTGLKNLRE 324

Query: 413 T 411
           T
Sbjct: 325 T 325


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 413 TLSCSQRDTTLTM*AVICTGNVICR-VGCICTE 318
           T +  Q D   T   +IC GN +CR   C C E
Sbjct: 721 TTTAIQTDDECTAIGLICKGNTVCRNKSCQCPE 753


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 413 TLSCSQRDTTLTM*AVICTGNVICR-VGCICTE 318
           T +  Q D   T   +IC GN +CR   C C E
Sbjct: 818 TTTAIQTDDECTAIGLICKGNTVCRNKSCQCPE 850


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,918
Number of Sequences: 27780
Number of extensions: 234147
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)