Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15n05
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 29 0.64
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.84
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 2.6
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 3.4
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 4.5
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 5.9
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.9
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 675 LMNTKTFKKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 532
LMN K + VQ+++ +AIN S + DL+ + T N+R Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.84
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 374 KNTL*NSTFIVFNCCMTKSRLLLSRVYTISSMMRLRKCMVSHMVVNV*VKLLGWHERKLS 553
+NTL ++ + + +L+LSR+Y ++ LR + + + N KL + RK S
Sbjct: 225 QNTLSYELSGLYEKLLPRYQLVLSRIYPYAAASNLRNLLSLYRLPNCFGKLNSFDLRKGS 284
Query: 554 SVVLSINSM 580
S L +SM
Sbjct: 285 STSLKRSSM 293
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 623 HSINCCTSYFLNVFVFIKHANG 688
HS+N S+F++VF+F + ANG
Sbjct: 938 HSVNS-RSFFISVFMFCRDANG 958
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 433 SRFCHAAVENDEGAILQRIFHTTVRHVPRSLYERQRFPHLPH 308
+RF HA+ +L V H + LY +P LPH
Sbjct: 437 NRFTHASPNRSSCVVLMDELDQLVTHNQKVLYNFFNWPSLPH 478
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = -3
Query: 561 TTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYN 382
TTE +++ K T T + ++ HFL + + + ++T ++ + F + ++ + N
Sbjct: 328 TTECHIQ-IPDKEATITVGSNFEVDHFLKISVGNKLWTLNRVEIPFKIISANSLSLEQEN 386
Query: 381 VFFILQ 364
VF L+
Sbjct: 387 VFLNLE 392
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = -3
Query: 690 IPFACLMNTKTFKKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKS 523
I F L T YE+ I+ AIN+S L+ R+ D TT E L + P+
Sbjct: 565 IAFNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPED 624
Query: 522 FTYTFTTI 499
F F T+
Sbjct: 625 FDSLFKTL 632
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -3
Query: 471 IIDDMVYTRD-KSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIE 295
+ID VY+ +S + V Q ++++ + ++ L CR Y N+ + I+
Sbjct: 285 VIDLFVYSGSTESPKETVKQFVQSIGKPAMHQYWTLGYHSCRWGYTNITEIMDVRQNYID 344
Query: 294 IALDKEKYGTDITFVDSYQQET 229
+ E + +DI +++ Y+ T
Sbjct: 345 ADIPVETFWSDIDYMEKYRDFT 366
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 520 YLHVYHHMGHHALSQSHHRRYGVYARQKQSRFC 422
++H+YH+ H + S Y AR S FC
Sbjct: 34 HMHLYHYEHIHLFTSSQSYMYHPNARFSYSPFC 66
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 304 LNVVNEETFDVHIMIAAHGAL*YEKYVVK 390
LN+V E+T D++I +AA +L ++ Y+ K
Sbjct: 39 LNIVAEDTVDINIKLAA--SLYFKNYIKK 65
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 160 DFSQPR*RLQVDTKKSKAARSLRTHD 83
DF+ PR R +VDT ++KA + D
Sbjct: 79 DFATPRKRSEVDTDQNKAVKKTIRQD 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,582
Number of Sequences: 5004
Number of extensions: 65368
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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