Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n05
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.4  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   4.2  
U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical ...    28   5.5  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   7.3  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   7.3  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    28   7.3  
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    27   9.6  

>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -3

Query: 420 MQQLKTMKVLFYNVFFILQCAMCR----DHYMNVKGFLIYHIELIEIALDKEKYGTDI 259
           M++LK   ++    +++ +  +CR    DHY  +K F+I ++  +E   +KE Y   I
Sbjct: 1   MKRLKLRTLISNEYYYVAEAEVCRAPLADHYKVLKNFIISYVRKLE--ENKELYSAGI 56


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = -2

Query: 619 H*RIPRHGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHH--ALSQSHHRRYG 455
           H     H    V HR +G++H T  +     E   H  HH  HH       HH  +G
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHG 446



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = -2

Query: 583 SHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRYGVYARQKQSRFCHAAVEN 404
           SH ++  +H T  +         H  HH  HH  S +HH  +G +         H    +
Sbjct: 650 SHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHH--SPAHHGHHGAHHEHGAHHGAHHGHHD 707

Query: 403 DE 398
           D+
Sbjct: 708 DK 709


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 552 LNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMV-YTRDKSSLDFVMQQLKTMKVLFYNVF 376
           L L  C P  F+  F+++     F+S+++  +   TR++    F++ +L ++ V FY+ F
Sbjct: 735 LPLEHCSPFGFSKYFSSLLLCSEFISIVLPLIKRRTRERIIRVFIISRL-SIFVHFYHDF 793

Query: 375 FIL 367
           F+L
Sbjct: 794 FLL 796


>U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical
           protein M02B7.1 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 460 YGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLY 338
           Y +   Q  S    + +E DE  IL+   H  +RHVPR L+
Sbjct: 137 YSIIIPQSLSMEMLSRIEQDE--ILKTAKHLDIRHVPRELF 175


>AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.11 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/54 (18%), Positives = 32/54 (59%)
 Frame = -3

Query: 495 DTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 334
           +T   L + ++++     +SS   ++++LK  +++FY+++  ++  +   HY++
Sbjct: 87  ETKILLEVALNELYEETMESSAKMLLEELKCARLVFYSLYRCIRQGIAVGHYLD 140


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
 Frame = -3

Query: 390 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 211
           F + F+ L  ++ R  ++NV+ F+I H+E+ +IA D  + G     V+ +      +D  
Sbjct: 299 FGSFFYWLLVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQ-EKVNRFISNYLKSDGV 354

Query: 210 AVSNNMLMKNLMAY----VIMTFHNHVNDYKWIQRNQKPPAHYER-MTWGEYKKLLN 55
            V   M +++ + +    V   + N       ++R+   P   ER   W  Y  L+N
Sbjct: 355 FVIRMMTLQSGVIFGTDLVQELWRNFHGSEPQLKRSNSAPKIEEREQWWPAYPSLVN 411


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
 Frame = -3

Query: 390 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 211
           F + F+ L  ++ R  ++NV+ F+I H+E+ +IA D  + G     V+ +      +D  
Sbjct: 299 FGSFFYWLLVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQ-EKVNRFISNYLKSDGV 354

Query: 210 AVSNNMLMKNLMAY----VIMTFHNHVNDYKWIQRNQKPPAHYER-MTWGEYKKLLN 55
            V   M +++ + +    V   + N       ++R+   P   ER   W  Y  L+N
Sbjct: 355 FVIRMMTLQSGVIFGTDLVQELWRNFHGSEPQLKRSNSAPKIEEREQWWPAYPSLVN 411


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 396 VLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQ 235
           ++FYNVF +    + ++H       LI + E  E + D   Y T    +D +Q+
Sbjct: 330 IIFYNVFVMFPAIILQEHLKTTTRILINNDE-FECSKDPIVYQTYRIMIDRFQK 382


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 241 PTGNRRCGRCGCVEQYAHEKFNGLRYHDFS 152
           P GN RC  CGC     H    GL +H+ +
Sbjct: 129 PEGNFRCDECGC----NHYTLKGLIHHEMN 154


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 557 VVLSINSMRNCCKSMSGDALMAHSINCCTSYFLNVFVF 670
           V+L+++S  +   +   DA+    INC TS+F    VF
Sbjct: 368 VLLALSSYNDFNNNCYRDAVTTSIINCATSFFSGCVVF 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,217
Number of Sequences: 27780
Number of extensions: 386178
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)