Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15n03
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 76 4e-15
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 68 1e-12
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 59 5e-10
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 57 2e-09
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 57 3e-09
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 54 2e-08
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 49 5e-07
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 47 3e-06
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 40 4e-04
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 39 6e-04
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 34 0.016
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 34 0.016
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 3.3
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 26 4.3
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 25 7.5
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 7.5
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 9.9
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 76.2 bits (179), Expect = 4e-15
Identities = 49/135 (36%), Positives = 71/135 (52%)
Frame = -2
Query: 668 KXNVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIAN 489
K N+ S + + K A + + G +IV SSI AY L Y+ +K + T+ ++N
Sbjct: 151 KTNIFSFFWVTKAAISHM--KSGSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSN 208
Query: 488 EVVHDNIRVNCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSN 309
+ IRVN VAPG + T S+ T + E S VPL R G+P E+AS FL +
Sbjct: 209 QYAQHGIRVNAVAPGPIYTPLVSS-TFPKEKIELS-DQVPLGRMGQPVEVASCYLFLACS 266
Query: 308 DASYITGETIVVAGG 264
D Y+TG+T+ GG
Sbjct: 267 DGGYMTGQTLHPNGG 281
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 67.7 bits (158), Expect = 1e-12
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Frame = -2
Query: 659 VKSSWLLAKEAYPELIKRG-GGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEV 483
++ ++L + P + K+G GG+IV I S+ + + AYS +K L LTKA+A
Sbjct: 105 LRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHIYLGS-PAYSAAKAGLENLTKALAVRY 163
Query: 482 VHDNIRVNCVAPGIV-ATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSND 306
IRVN APG + + + ++ P+ R G PE++A AV FL +
Sbjct: 164 GPLGIRVNVCAPGTIWSPAWDERFKKHPDVGDRMKRWYPVGRLGTPEDVARAVIFLADSK 223
Query: 305 ASYITGETIVVAGG 264
S+ITG T+ V GG
Sbjct: 224 NSFITGTTLYVDGG 237
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 59.3 bits (137), Expect = 5e-10
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Frame = -2
Query: 662 NVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPL--GAYSVSKTTLLGLTKAIAN 489
N+ ++ A+ A K+G G+++F +S++ + P +Y +K + L +A+A
Sbjct: 120 NLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAV 179
Query: 488 EVVHDNIRVNCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSN 309
E RVN V+PG + T + E +K P R G P+E+ A +L S+
Sbjct: 180 EWA-PFARVNSVSPGYIDTDLT--LYADENLRKKWKEYTPQARIGLPDELPGAYLYLASD 236
Query: 308 DASYITGETIVVAGG 264
+SY TG I+V GG
Sbjct: 237 ASSYCTGSDIIVDGG 251
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 57.2 bits (132), Expect = 2e-09
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = -2
Query: 662 NVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLG--AYSVSKTTLLGLTKAIAN 489
N+ + +A A P K+G G++V +S++ P AY+ SK ++ L K++A
Sbjct: 129 NLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAV 188
Query: 488 EVVHDNIRVNCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSN 309
E RVNCV+PG S +T + E P +R G +EIASA +L S+
Sbjct: 189 EW-RKFARVNCVSPGYTT----SDMTGGKFHKEWE-PYTPFERNGLAKEIASAYLYLASD 242
Query: 308 DASYITGETIVVAGG 264
ASY +G ++V GG
Sbjct: 243 AASYASGTNLIVDGG 257
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 56.8 bits (131), Expect = 3e-09
Identities = 40/110 (36%), Positives = 52/110 (47%)
Frame = -2
Query: 593 IVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEVVHDNIRVNCVAPGIVATKFASAI 414
I+ ISS + + Y+ SK L TK +A EV IRVN ++PG V T S
Sbjct: 133 ILNISSRLSTYALPGTSVYAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDTPMLS-- 190
Query: 413 TNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSNDASYITGETIVVAGG 264
+ A AEK VP+ R +EI A FL N Y TG + + GG
Sbjct: 191 SQIRAIAEKK---VPIGRLASTDEIVDACTFLLDN--RYTTGTILPITGG 235
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 54.0 bits (124), Expect = 2e-08
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = -2
Query: 611 KRGGGNIVFISSIAAYQPMEP--LGAYSVSKTTLLGLTKAIANEVVHDNIRVNCVAPGIV 438
K+G GN++ +S++A P + AY SK + L KA+A E + R+N V+PG
Sbjct: 146 KQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQLCKALAVEWA-EFARINSVSPGY- 203
Query: 437 ATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSNDASYITGETIVVAGG 264
FA+ + E ++ VP KR G E+ +L SN +S++TG ++V GG
Sbjct: 204 ---FATDMPGYEF-LKQWEPYVPFKRLGLTPELRGTYLYLASNASSFVTGLDLIVDGG 257
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 49.2 bits (112), Expect = 5e-07
Identities = 30/129 (23%), Positives = 57/129 (44%)
Frame = -2
Query: 662 NVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEV 483
NV + + P + G+I+ + SIA + Y +K+ L T A+ E
Sbjct: 117 NVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCSTKSALAQFTSALRKET 176
Query: 482 VHDNIRVNCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSNDA 303
+ IR+ V PG+V T+F ++ +K+ ++ PE+IA + F +
Sbjct: 177 IDTRIRIMEVDPGLVETEF--SVVRFHGDKQKADNVYKNSEPLTPEDIAEVILFALTRRE 234
Query: 302 SYITGETIV 276
+ + +T+V
Sbjct: 235 NVVIADTLV 243
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = -2
Query: 641 LAKEAYPELIKRG-GGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEVVHD-NI 468
+ KEA + + G GG I+ ISS+A Y P L Y+ SK + GL++ I E+ + NI
Sbjct: 113 ITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNI 172
Query: 467 RVNCVAPGIVATKFASA 417
+ V PG + T++AS+
Sbjct: 173 AITIVQPGGMQTEWASS 189
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 39.5 bits (88), Expect = 4e-04
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Frame = -2
Query: 632 EAYPELIKRGGGNI-VFISSIA----AYQPMEPLGAYSVSKTTLLGLTKAIANEVVHDNI 468
+A+ LIK+G I VF SS+A A+ P AY SK L K I+ E+ +
Sbjct: 123 QAFYPLIKKGRSKIIVFTSSLAGSMGAFFPSSQ-SAYGQSKAALNYTMKEISFELQDEGF 181
Query: 467 RVNCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGKPEEIASAVAFLTSN 309
V + PG V T A I N A + + + K+ PE+ AS + + N
Sbjct: 182 IVISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQALTPEKSASDMLKVVDN 234
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -2
Query: 632 EAYPELIKRGGGNIVFISSIAAYQPMEPLGAYSVSKTTLLGLTKAIANEVVHDNIRVNCV 453
+A+ + R G IV ++S+ +Y P AY+ SK LL + + E+ ++V +
Sbjct: 117 KAFQHQLIRAKGTIVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTSI 176
Query: 452 APGIVATKFAS 420
G V TK S
Sbjct: 177 MTGGVQTKIQS 187
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 662 NVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGA-YSVSKTTLLGLTKAIANE 486
NV + + K P + G I+ +SSI PLG Y +K + G+++A+ E
Sbjct: 73 NVFGALEVIKAITPIFRSQHNGMIINVSSIGGKMTF-PLGCLYYGTKYAIEGISEALTWE 131
Query: 485 VVHDNIRVNCVAPGIVATKF 426
+ ++V + PG AT+F
Sbjct: 132 MQSIGVKVKIIEPGFTATEF 151
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 662 NVKSSWLLAKEAYPELIKRGGGNIVFISSIAAYQPMEPLGA-YSVSKTTLLGLTKAIANE 486
NV + + K P + G I+ +SSI PLG Y +K + G+++A+ E
Sbjct: 73 NVFGALEVIKAITPIFRSQHNGMIINVSSIGGKMTF-PLGCLYYGTKYAIEGISEALTWE 131
Query: 485 VVHDNIRVNCVAPGIVATKF 426
+ ++V + PG AT+F
Sbjct: 132 MQSIGVKVKIIEPGFTATEF 151
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 140 CIKNRRYTLKIIYSTINTTINPKTQVKQTNY 232
C+ N++ L +YS INTT+ + + +Y
Sbjct: 300 CVANKQLILVFLYSLINTTLRLRPDSWKASY 330
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 204 GLIVVLIVEYIIFKVYLRFFIHIAP---SVRQGPK 109
GLIV ++ I V+LRFF+ +P SV PK
Sbjct: 12 GLIVGQLLTLAIIYVFLRFFLFCSPIPKSVANSPK 46
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 557 MEPLGAYSVSKTTLLGLTKAIANEVVHDNIRV 462
M P+G Y+ +LG +K I EVV + I +
Sbjct: 230 MGPIGLYAGRWAQILGASKVIGIEVVPERIEL 261
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 488 EVVHDNIRV--NCVAPGIVATKFASAITNSEAGAEKSLSIVPLKRFGK-PEEI 339
E+ +DNI++ N +++ N AGA +L+++PL GK P+++
Sbjct: 22 ELCYDNIKLSNNAWDSNLLSVNPFYLSVNWNAGAGGALAVIPLNERGKLPDQV 74
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 574 LLHTSLWSP*VPTALVKRH 518
LLH +WS +PT L ++H
Sbjct: 329 LLHGQIWSDNIPTLLDQKH 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,068
Number of Sequences: 5004
Number of extensions: 56065
Number of successful extensions: 155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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