Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n03
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.1  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 545 GAYSVSKTTLLGLTKAIANEVVHDNI 468
           G Y +S    LGLT+  A + +HD I
Sbjct: 320 GIYDISNKRRLGLTEYQAVKEMHDGI 345


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 196 CGVNCRIYYF*SISPVFYTYCT 131
           CG N   +YF  + P+F   CT
Sbjct: 29  CGPNVIDHYFRDLQPLFKLACT 50


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 KIIYSTINTTINPKTQVKQTNYY 235
           KII S +N TI+     K+  YY
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYY 324


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 KIIYSTINTTINPKTQVKQTNYY 235
           KII S +N TI+     K+  YY
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYY 335


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 KIIYSTINTTINPKTQVKQTNYY 235
           KII S +N TI+     K+  YY
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYY 335


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 KIIYSTINTTINPKTQVKQTNYY 235
           KII S +N TI+     K+  YY
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYY 324


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 414 YCRSKFCCNYS 446
           YCR  F C YS
Sbjct: 10  YCRRNFSCYYS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,056
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)