Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15n01
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   5.2  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.9  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   9.1  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 326 FRQHDETSSQPKLAFRRQKLEIQCAV 403
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 205 CNCRTIKLNGMRSSKKIKRQ 146
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 506
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 388 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 567
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 568 IIELTTP 588
            +E  TP
Sbjct: 70  YVEPATP 76


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +3

Query: 414 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 503
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 274 DT*RCRTASVLKNCDPTCLF-TGLCNCRTIKLNGMRSSKKIKRQTRXSLVCYFTK 113
           DT +     V   C+ + +F + +C CR     G+  + K  +     LV YF K
Sbjct: 260 DTSKSLAVRVHDECNGSDVFQSDICTCRPYLTFGIEEAAKEAQNGGAGLVVYFRK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,346
Number of Sequences: 5004
Number of extensions: 52673
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)