Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15m23
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 158 3e-39
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 154 7e-38
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 147 8e-36
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.022
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 4.5
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 158 bits (384), Expect = 3e-39
Identities = 98/220 (44%), Positives = 121/220 (55%), Gaps = 8/220 (3%)
Frame = -1
Query: 650 GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPA 486
GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+ S A
Sbjct: 32 GLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTA 91
Query: 485 ERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYAD 306
E + ++ DVDLFG +A A
Sbjct: 92 EGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAV 145
Query: 305 KKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQ 126
K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI KLQ
Sbjct: 146 KASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQ 205
Query: 125 IMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 15
IM I DD VSVD L E + +F+QS DI AFNKI
Sbjct: 206 IMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 154 bits (373), Expect = 7e-38
Identities = 96/224 (42%), Positives = 120/224 (53%), Gaps = 7/224 (3%)
Frame = -1
Query: 665 LKPPQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPA 486
L GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 8 LHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALAS 67
Query: 485 ERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLK 318
+ G + D+DLFG +
Sbjct: 68 RFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------E 120
Query: 317 AYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGI 138
A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYGI
Sbjct: 121 RAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGI 180
Query: 137 NKLQIMCVIEDDKVSVD-LLTEKIQE--FEDFVQSVDIAAFNKI 15
KLQIM I DD VSVD L+ E + E +FVQS DI AFNKI
Sbjct: 181 KKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 147 bits (356), Expect = 8e-36
Identities = 94/223 (42%), Positives = 116/223 (52%), Gaps = 11/223 (4%)
Frame = -1
Query: 650 GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPA 486
GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I S A
Sbjct: 13 GLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTA 72
Query: 485 ER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKA 315
+ K S DVDLFG +A
Sbjct: 73 DGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RA 126
Query: 314 YADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGIN 135
A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI
Sbjct: 127 AAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIK 186
Query: 134 KLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 15
KLQIM I DD VSVD L E + +++QS DI AFNKI
Sbjct: 187 KLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = -1
Query: 647 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 504
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = -1
Query: 653 QGLNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIASY 495
Q L+ + +LA Y++G S AD + K P A L PHV W++ I+S
Sbjct: 146 QVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS- 204
Query: 494 TPAERKT 474
PA +KT
Sbjct: 205 RPAWKKT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,413
Number of Sequences: 37544
Number of extensions: 358605
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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