Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15m22
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   4.1  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   4.1  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   5.4  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   7.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.1  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   9.4  

>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 488 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 378
           D  F     V + VQ P T  +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = -2

Query: 560 WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRT--VTEAKNFEPWREKCS 387
           W++    F+E FL + D  +Q     +++   QV   V    T  V E +   P+  + +
Sbjct: 545 WVEKIVSFIEQFLNFQDMEIQRRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNT 604

Query: 386 VE----GNPACWVPHSCKLTSKEVPGETINLQTCLRCPVN 279
           +     G P    P + K   K +P E ++    L CP+N
Sbjct: 605 MYKLFFGEPL--NPVAVKAQRKVMPDENLD----LNCPIN 638


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 342 HFKGSSRRNHQFTNLFEMPSQLPL 271
           HF+ S++ N   T+LFE  S+L L
Sbjct: 154 HFEASAKENTNVTDLFETVSRLAL 177


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 300  LFEMPSQLPLVKRPH-----GRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVGNV 148
            L+ +P  +P+    H     G WPL  S + E   +  +  I  S CSKY+  GNV
Sbjct: 1290 LYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEE--VCSVFNISKSVCSKYVQFGNV 1343


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -1

Query: 504 PSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 325
           P  P + +   HD  + + T   + D   +L    R+ LRR     L  S L      ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319

Query: 324 RRNHQFTNLFEMPS 283
             NH  T+L   P+
Sbjct: 320 NANHN-TDLSHDPT 332


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -2

Query: 551 NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNP 372
           N+P    +F ++ + +LQ+   +  +   +++  V++  T + AK F P  +      N 
Sbjct: 13  NSPTTTTSFSWFTNNMLQTRLGLGALRQGRLLFAVKSFSTTSVAKIFPPPPQTIKGTVND 72

Query: 371 ACWVPHSCKL 342
           A   PH  KL
Sbjct: 73  AAVFPHHSKL 82


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 359 PHSCKLTSKEVPGETINLQTCLRCP 285
           P+S  +TS   PGE +N    L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 421 PRTSSRGEKSAPSKET-LHAGYLIPASSLQRKFPEKPSIYK 302
           P  S  G+     K+T L     + AS  QRK  EKPS+ K
Sbjct: 193 PLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,963
Number of Sequences: 5004
Number of extensions: 60287
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)